View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16141_low_8 (Length: 501)
Name: NF16141_low_8
Description: NF16141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16141_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 8963932 - 8964406
Alignment:
| Q |
19 |
aacttttaatagaaatgttgtcctgatcccaaaattacaagtccatttcagggtggnnnnnnnnncaaaaggcaagaagtgtataatgtgatgctgagta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
8963932 |
aacttttaatagaaatgttgtcctgatcccaaaattacaagtccatttcaggttggtttttttttcaaaaggcaagaagattataatgtgatgctgagta |
8964031 |
T |
|
| Q |
119 |
caatatatgacatttgaactttaatattagtatatgattgaactttcttactggtgaattctgtttaaggtattgactaattagatgattttttacagta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8964032 |
caatatatgacatttgaactttaatattagtatatgattgaactttcttactggtgaattctgtttaaggtattgactaattagatgattttttacagta |
8964131 |
T |
|
| Q |
219 |
agcttctatagtgtacttttattttacctaaaattggttttctgtcatcattgttatactataccttcactatgtgatgagtaatgaagaaactaactaa |
318 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8964132 |
agcttctatagtgtagttttattttacctaaaattggttttctgtcatcattgttatactataccttcactatgtgatgagtaatgaagaaactaactaa |
8964231 |
T |
|
| Q |
319 |
gttaatgtgcatattgttttagtatcaatatttaatgggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8964232 |
gttaatgtgcatattgttttagtatcaatatttaatgggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaa |
8964331 |
T |
|
| Q |
419 |
tgaaattgatgaaactgtagatgaaagaaaaccttattttctttgcaaacacattccattcaagctcttcatctc |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8964332 |
tgaaattgatgaaactgtagatgaaagaaaaccatattttctttgcaaatacattccattcaagctcttcatctc |
8964406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 452
Target Start/End: Complemental strand, 8944943 - 8944850
Alignment:
| Q |
359 |
atatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaatgaaattgatgaaactgtagatgaaagaaaacct |
452 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| |||||||||||||| | | || ||||||||||| |||| |||||||||||||||| |
|
|
| T |
8944943 |
atatcgtttaccactaatgaaaaaagttgaatcacagattaaaaatagagacggaaaaattgaaattgatggaactagagatgaaagaaaacct |
8944850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 100 - 283
Target Start/End: Complemental strand, 16727962 - 16727786
Alignment:
| Q |
100 |
tataatgtgatgctgagtacaatatatgacatttgaactttaatattagtatatgattgaactttcttactggtgaattctgtttaaggtattgactaat |
199 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| || ||||||||||||| ||||| |||| || ||||||||| |||||||||| | |||||| |
|
|
| T |
16727962 |
tataatgtgatgctgagtaaaatat--gacatttgaacatttatattagtatatgtttgaattttcctattggtgaattatgtttaaggtgtcaactaat |
16727865 |
T |
|
| Q |
200 |
tagatgattttttacagtaagcttctatagtgtacttttattttacctaaaattggttttctgtcatcattgttatactatacc |
283 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
16727864 |
tagatgattttttacagtaagc-----tagtgtacttttattttgtctaaagttggttttctgtcatcattattatactatacc |
16727786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 84 - 283
Target Start/End: Complemental strand, 17009040 - 17008840
Alignment:
| Q |
84 |
caaaaggcaagaagtgtataatgtgatgctgagtacaatatatgacatttgaactttaatattagtatatgattgaactttcttactggtgaattctgtt |
183 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| ||||| ||||||||||| || ||||||||||||| ||||| |||| || ||||||||| |||| |
|
|
| T |
17009040 |
caaaaggtaagaagattataatgtgatgctgagtaaaatat--gacatttgaacatttatattagtatatgtttgaattttcctattggtgaattatgtt |
17008943 |
T |
|
| Q |
184 |
taaggt----attg---actaattagatga-ttttttacagtaagcttctatagtgtacttttattttacctaaaattggttttctgtcatcattgttat |
275 |
Q |
| |
|
|||||| | || ||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||| ||| |||| |||||||||| |||| |
|
|
| T |
17008942 |
taaggtgtcaactgtcaactaattagatgatttttttatagtaagc-----tagtgtacttttattttgtctaaagttgattttatgtcatcattattat |
17008848 |
T |
|
| Q |
276 |
actatacc |
283 |
Q |
| |
|
|||||||| |
|
|
| T |
17008847 |
actatacc |
17008840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 17009136 - 17009083
Alignment:
| Q |
19 |
aacttttaatagaaatgttgtcctgatcccaaaattacaagtccatttcagggtg |
73 |
Q |
| |
|
|||||||||||||||||||||||| || |||| |||||||||| ||||||||||| |
|
|
| T |
17009136 |
aacttttaatagaaatgttgtcctaat-ccaagattacaagtcgatttcagggtg |
17009083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 49945901 - 49945821
Alignment:
| Q |
198 |
attagatgattttttacagtaagcttctatagtgtacttttattttacctaaaattggttttctgtcatcattgttatactatacc |
283 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
49945901 |
attagatgatttttaacagtaagct-----agtgtacttttattttgtttaaagttggttttctgtcatcattattatactatacc |
49945821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 445
Target Start/End: Complemental strand, 21685667 - 21685541
Alignment:
| Q |
320 |
ttaatgtgcatattgttttagtatcaatatttaat-gggcatatcgtttaccactaattggaaaagttgaattacaaattaaaaatagagaaagtacaaa |
418 |
Q |
| |
|
||||||| |||||||||| ||| | ||| ||| || |||||||||||||||||| |||| ||||||||||||| | ||||| || | ||| || | || |
|
|
| T |
21685667 |
ttaatgttcatattgtttcagtttaaatgtttgatagggcatatcgtttaccaccaattaaaaaagttgaattatatattaagaaaatagacagaaaaag |
21685568 |
T |
|
| Q |
419 |
tgaaattgatgaaactgtagatgaaag |
445 |
Q |
| |
|
||||||||||| |||| ||||||||| |
|
|
| T |
21685567 |
tgaaattgatggaactagagatgaaag |
21685541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University