View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16142_high_5 (Length: 256)
Name: NF16142_high_5
Description: NF16142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16142_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 52094007 - 52094234
Alignment:
| Q |
19 |
agattaaccttacggagttttggaagtgccaatgacaatatatttgtattgctttcaattcttttaattagggaagctaatgtcaagttcttcaaggaaa |
118 |
Q |
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| T |
52094007 |
agattaaccttacggagttttggaagtgccaatgacaatatatttgcattgctttcaattcttttaattagggaagttaatgacaagttcttcaaggaaa |
52094106 |
T |
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| Q |
119 |
ggaaaacattcagcaatgatgataaggtcagtttgactgacaaataacatgttagaacaagtgagagaggtcaaagttttcatctttgctgctaaacttt |
218 |
Q |
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| T |
52094107 |
gggaaacattcagcaatgatgataaggtcagttttactgaccgaaaacatgttagaacaaatgagagaggtcaaagttttcatctttgcagctaaacttt |
52094206 |
T |
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| Q |
219 |
gaaacccatctttagggatgtagtgatt |
246 |
Q |
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| T |
52094207 |
gaaacccatctatagggatgtagtgatt |
52094234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 52085161 - 52085387
Alignment:
| Q |
19 |
agattaaccttacggagttttggaagtgccaatgacaatatatttgtattgctttcaattcttttaattagggaagctaatgtcaagttcttcaaggaaa |
118 |
Q |
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| T |
52085161 |
agatcaaccttgcggagtttaggaagtgtcaatggcaatatatatgtattgcttttaactgattga----gggaaactaatgtcaagttcttcaaggaaa |
52085256 |
T |
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| Q |
119 |
ggaaaacattcagcaatgatgataaggtcagtttgactgacaaataacatgttagaacaagtgagagaggtcaaagttttcatctttgctgctaaacttt |
218 |
Q |
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| T |
52085257 |
ggaaaacattcagcaatgatgataaggtcagtttgactgacaaataacatgttagaacaagtgagagaggtcaaagttttcatctttgctgctaaacttt |
52085356 |
T |
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| Q |
219 |
gaaacccatctttagggatgtagtgattgga |
249 |
Q |
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| T |
52085357 |
gaaacccatctttagggatgtagtgattgga |
52085387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 12124593 - 12124625
Alignment:
| Q |
173 |
gaacaagtgagagaggtcaaagttttcatcttt |
205 |
Q |
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| T |
12124593 |
gaacaagtgagagaggtcaaatttttcatcttt |
12124625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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