View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16142_low_1 (Length: 528)
Name: NF16142_low_1
Description: NF16142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16142_low_1 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr1 (11 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 35 - 528
Target Start/End: Original strand, 30732415 - 30732908
Alignment:
| Q |
35 |
ttccgaattgtgccttatgcgaaaatggtatcgaagataacagtgagctttgttggcgtagagctggtcttcgaaatttcattcaacagcatacttcgca |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30732415 |
ttccgaattgtgccttatgcgaaaatggtatcgaagataacagtgagctttgttggcgtagagctggtcttcgaaatttcattcaacagtatacttcgca |
30732514 |
T |
|
| Q |
135 |
ctctcggactggagcagaattttttgtctgtgtgttgcagaattttaatcaggaaataaaggaactaaaatatttggtataatgaagtagtggtgcctgc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30732515 |
ctctcggactggagcagaattttttgtctgcgtgttgcagaattttaatcaggaaataaaggaactacaatatttggtataatgaagtagtggtgcctgc |
30732614 |
T |
|
| Q |
235 |
tactgtgagtgcacatgctgctcctctactcactaattggtccggcacttaaactgtaaggcgtccaaggactgctgcaaattctgtcgtggacaaaacc |
334 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30732615 |
tactgtgagtgcacatgctgctactctactcactaattggtccggcacttaaactgtaaggcttccaaggactgctgcaaattctgtcgtgggcaaaacc |
30732714 |
T |
|
| Q |
335 |
tcatataggatgctacaaatggattgacgaattgcggcttgagttgaattggattcaaagtgcgtggttgataaattccacggtaaaagtccaggggtgt |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
30732715 |
tcatataggatgctacaaatggattgacgaattgcggcttgagttgaattggattcaaagtgcgtggttgataaattccacagtaaaagtctaggggtgt |
30732814 |
T |
|
| Q |
435 |
cggatctaagtgatattatcctagaccgtagagataatcttatccgttgtaaaaattagagatgagtttattaggagacaagtcaaaagggttg |
528 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30732815 |
cggatctaagtggtattatccgagaccgtagagataatcttatccgttgtaaaaattaaagatgagtttattaggagacaagtcaaaagggttg |
30732908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 528
Target Start/End: Complemental strand, 14668804 - 14668291
Alignment:
| Q |
16 |
cattgacaactagtttaccttccgaattgtgccttatgcgaaaatggtatcgaagataacagtgagctttgttggcgtagagctggtcttcgaaatttca |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14668804 |
cattgacaactattttaccttccgaattgtgccttatgcgaaaatggtatcgaagataacagtgagctttgttggcgtagagctggtcttcgaaatttca |
14668705 |
T |
|
| Q |
116 |
ttcaacagcatacttcgcactctcggactggagcagaattttttgtctgtgtgttgcagaattttaatcaggaaataaaggaactaaaatatttgg-tat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
14668704 |
ttcaacagcatacttcgcactctcggactggagcataattttttgtctgcgtgttgcagaattttaatcaggaaataaaggaactacaatatttgggtat |
14668605 |
T |
|
| Q |
215 |
aatgaagtagtggtgcctgctactgtgagtgcacatgctgctcctctactcactaattggtccggcacttaaactgtaaggcgtccaaggactgctgcaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14668604 |
aatgaagtagtggtgcctgctactgtgagtgcacatgctgctactttactcactaattggtccggcacttaaactgtaaggcgtccaaggactgctgcaa |
14668505 |
T |
|
| Q |
315 |
attctgtcgtggacaaaacctcatataggatgctacaaatggattgacgaattgcggcttgagttgaattggattcaaagtgcgtggttgataaattcca |
414 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14668504 |
attctgtcgtggacaaaaccttatataggatgctacaaatggattgacgaattgcggcttgagttcaattggattcaaagtgcgtggttgataaattcca |
14668405 |
T |
|
| Q |
415 |
cggtaaaagtccaggggtgtcggatctaagtgatattatcctagaccgtagagataatcttatccgttgtaaaaattagagatgagtttattaggagaca |
514 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
14668404 |
cagtaaaagtctaggggtgtcggatctaagtgatattatccgagaccgtagagatattcttgtccgttgtaaaaattaaagatgagtttattaggataca |
14668305 |
T |
|
| Q |
515 |
agtcaaaagggttg |
528 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14668304 |
agtcaaaagggttg |
14668291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 172 - 412
Target Start/End: Original strand, 14707193 - 14707433
Alignment:
| Q |
172 |
cagaattttaatcaggaaataaaggaactaaaatatttggtataatgaagtagtggtgcctgctactgtgagtgcacatgctgctcctctactcactaat |
271 |
Q |
| |
|
|||| |||||||||| |||||||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14707193 |
cagagttttaatcagcaaataaaggaacaacaaaatttggtataatgaagtagaggtgcctgctactgtgagtgcacatgctgctactctactcactaat |
14707292 |
T |
|
| Q |
272 |
tggtccggcacttaaactgtaaggcgtccaaggactgctgcaaattctgtcgtggacaaaacctcatataggatgctacaaatggattgacgaattgcgg |
371 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14707293 |
tggtccggcacttaaactgaaaggcatccaaggactgctgcaaattctgtcgtggacaaaacctcatatagaatgctacaaatggattgacgaattgcgg |
14707392 |
T |
|
| Q |
372 |
cttgagttgaattggattcaaagtgcgtggttgataaattc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14707393 |
cttgagttgaattggattcaaagtgcgtggttgataaattc |
14707433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 71 - 355
Target Start/End: Complemental strand, 14653357 - 14653067
Alignment:
| Q |
71 |
ataacagtgagctttgttggcgtagagctggtcttcgaaatttc-attcaacagcat-----acttcgcactctcggactggagcagaattttttgtctg |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||| ||||| ||||||||||||||| ||||| ||||| ||| |
|
|
| T |
14653357 |
ataacagtgagctttgttggcgtagagctggtctttggaatttttattcagcagcatgcttcacttcacactctcggactggaacagaaattttttcctg |
14653258 |
T |
|
| Q |
165 |
tgtgttgcagaattttaatcaggaaataaaggaactaaaatatttggtataatgaagtagtggtgcctgctactgtgagtgcacatgctgctcctctact |
264 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| | || ||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
14653257 |
catgttgcagaattttaatcaggatataatggaaaaacaaaatttggtataatgaagtagaggcatctgctactgtgagtgcacatggtgctactctact |
14653158 |
T |
|
| Q |
265 |
cactaattggtccggcacttaaactgtaaggcgtccaaggactgctgcaaattctgtcgtggacaaaacctcatataggatgctacaaatg |
355 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
14653157 |
cactaattggtccggcacttaaacagtaatgcgtccaaggactgctgcaaattctgtcgtggataaaacctcatctaggacgctacaaatg |
14653067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 71 - 355
Target Start/End: Complemental strand, 14663148 - 14662858
Alignment:
| Q |
71 |
ataacagtgagctttgttggcgtagagctggtcttcgaaatttc-attcaacagcat-----acttcgcactctcggactggagcagaattttttgtctg |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||| ||||| ||||||||||||||| ||||| ||||| ||| |
|
|
| T |
14663148 |
ataacagtgagctttgttggcgtagagctggtctttggaatttttattcagcagcatgcttcacttcacactctcggactggaacagaaattttttcctg |
14663049 |
T |
|
| Q |
165 |
tgtgttgcagaattttaatcaggaaataaaggaactaaaatatttggtataatgaagtagtggtgcctgctactgtgagtgcacatgctgctcctctact |
264 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| | || ||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
14663048 |
catgttgcagaattttaatcaggatataatggaaaaacaaaatttggtataatgaagtagaggcatctgctactgtgagtgcacatggtgctactctact |
14662949 |
T |
|
| Q |
265 |
cactaattggtccggcacttaaactgtaaggcgtccaaggactgctgcaaattctgtcgtggacaaaacctcatataggatgctacaaatg |
355 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
14662948 |
cactaattggtccggcacttaaacagtaatgcgtccaaggactgctgcaaattctgtcgtggataaaacctcatctaggacgctacaaatg |
14662858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 439 - 528
Target Start/End: Original strand, 14707432 - 14707521
Alignment:
| Q |
439 |
tctaagtgatattatcctagaccgtagagataatcttatccgttgtaaaaattagaga-tgagtttattaggagacaagtcaaaagggttg |
528 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14707432 |
tctaagtgatattatccgagaccgtagagataatcttgtccgttgtaaaaatta-agattgagtttattaggagacaagtcaaaagggttg |
14707521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 378 - 490
Target Start/End: Original strand, 14702757 - 14702869
Alignment:
| Q |
378 |
ttgaattggattcaaagtgcgtggttgataaattccacggtaaaagtccaggggtgtcggatctaagtgatattatcctagaccgtagagataatcttat |
477 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||| |||| |||| |||||||||||||| ||||||||||||| |||| | || ||||||| | |
|
|
| T |
14702757 |
ttgaattggattcaaagtgtgcggttgataaactccacagtaagagtctaggggtgtcggatcatagtgatattatccaagactgatgatataatctagt |
14702856 |
T |
|
| Q |
478 |
ccgttgtaaaaat |
490 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14702857 |
ccgttgtaaaaat |
14702869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 384 - 488
Target Start/End: Complemental strand, 14665343 - 14665240
Alignment:
| Q |
384 |
tggattcaaagtgcgtggttgataaattccacggtaaaagtccaggggtgtcggatctaagtgatattatcctagaccgtagagataatcttatccgttg |
483 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||| |||| || |||||||||||| |||||| ||| || || ||| ||| |||||||| ||||||| |
|
|
| T |
14665343 |
tggattcaaagtgcgtggttgatcaattccacagtaagagtctagaggtgtcggatcttagtgatgtta-ccgagcccgaagatataatcttgtccgttg |
14665245 |
T |
|
| Q |
484 |
taaaa |
488 |
Q |
| |
|
||||| |
|
|
| T |
14665244 |
taaaa |
14665240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 14653439 - 14653382
Alignment:
| Q |
16 |
cattgacaactagtttaccttccgaattgtgccttatgcgaaaatggtatcgaagata |
73 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
14653439 |
cattgacagctagtttaccttccgaactgtgccttattcgaaaatggtatcgaagata |
14653382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 14663230 - 14663173
Alignment:
| Q |
16 |
cattgacaactagtttaccttccgaattgtgccttatgcgaaaatggtatcgaagata |
73 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
14663230 |
cattgacagctagtttaccttccgaactgtgccttattcgaaaatggtatcgaagata |
14663173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 14707115 - 14707162
Alignment:
| Q |
16 |
cattgacaactagtttaccttccgaattgtgccttatgcgaaaatggt |
63 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
14707115 |
cattgacagctagtttaccttccgaactgtgccttatgcaaaaatggt |
14707162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 14715443 - 14715520
Alignment:
| Q |
378 |
ttgaattggattcaaagtgcgtggttgataaattccacggtaaaagtccaggggtgtcggatctaagtgatattatcc |
455 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |||| ||| |||| |||| ||||| ||| | ||||||| |
|
|
| T |
14715443 |
ttgaattggattcaaagtgtgtagttgataaattccacaataaacgtctagggttgtccgatcttagttacattatcc |
14715520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University