View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16142_low_3 (Length: 356)
Name: NF16142_low_3
Description: NF16142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16142_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 339
Target Start/End: Complemental strand, 11758567 - 11758241
Alignment:
| Q |
13 |
gaagaagcaacgaataagtatgagaaggagtttcaccaacggatccttgtgaaaactcgctaccagaatcaatgaactgcgacggagaataatctgaacc |
112 |
Q |
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| T |
11758567 |
gaagaagcaacgaataagtatgagaaggagtttcaccaacggatccttgtgaaaactcgctaccagaatcaatgaactgcgacggagaataatctgaacc |
11758468 |
T |
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| Q |
113 |
ttcactgaaaatctccgagcgaacatcggagaatgtagttccctgacttgaacaatactcctccgattcatcatcgtcgtagtaagagaattgcagtttc |
212 |
Q |
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| T |
11758467 |
ttcactgaaaatatccgagtgaagatcagagaatgtagttccctgacttgaacaatactcctccgattcatcatcgtcgtagtaagagaattgcagtttc |
11758368 |
T |
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| Q |
213 |
tcagaacaagctagatcggaatcgtaacctgagttatccgaataattcttcataatcgattgcgcgataacgcaattctcatcagcattacgatttctcg |
312 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11758367 |
tcagaacaagctagatcggaatcgtaacctgaattatccgaataattcttcataatcgattgcgcgataacgcaattctcatcagcattacgatttctcg |
11758268 |
T |
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| Q |
313 |
aaatttgagaaaattcagattccgatg |
339 |
Q |
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||||||||||||||||||||||||||| |
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| T |
11758267 |
aaatttgagaaaattcagattccgatg |
11758241 |
T |
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