View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16142_low_4 (Length: 344)
Name: NF16142_low_4
Description: NF16142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16142_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 326
Target Start/End: Original strand, 12952423 - 12952734
Alignment:
| Q |
15 |
caaagggcaagtgaggtgggtcagcttcaccagaaagcatccctacaatctccttcatggaaggccttttcccaggagatctctgcaaacatagcaatgc |
114 |
Q |
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| T |
12952423 |
caaagggcaagtgaggtgggtcagcttcaccagaaagcatccctacaatctccttcatggaaggccttttcccaggagatctctgcaaacatagcaatgc |
12952522 |
T |
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| Q |
115 |
aatggtgatacatagcaatgcttgttctttatccaaagaatgtatagaactatcaacaagatccaagagttttccattatgagcaagttgtctagcccat |
214 |
Q |
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| T |
12952523 |
aatggtgatacatagcaatgcttgttctttatccaaagaatgtatagaactatcaacaagatccaagagttttccattatgagcaagttgtctagcccat |
12952622 |
T |
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| Q |
215 |
gaaattagatttgctctctcgaattctgaaatcggtgatgctgttacttgtaatggtcttcttccagcaaccagaaccaaaagcagaacaccgaaactat |
314 |
Q |
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| T |
12952623 |
gaaattagatttgctctctcgaattctgaaatcggtgatgctgttacttgtaatggtcttcttccagcaaccagaaccaaaagcagaacaccgaaactat |
12952722 |
T |
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| Q |
315 |
acacatcacatt |
326 |
Q |
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| T |
12952723 |
acacatcacatt |
12952734 |
T |
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