View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16142_low_5 (Length: 332)
Name: NF16142_low_5
Description: NF16142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16142_low_5 |
 | |
|
| [»] scaffold0241 (1 HSPs) |
| | |
|
| [»] scaffold0112 (1 HSPs) |
| | |
|
| [»] scaffold0093 (2 HSPs) |
| | |
|
| [»] scaffold0529 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 27321099 - 27321411
Alignment:
| Q |
9 |
acatcatcacaacaaatataactttattaggacaatatgtcattcaaaatatcaaacttaatttatttcatacatcataacaacattacataagttttca |
108 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27321099 |
acatcataacaacaaatataactttattaggacaatatgtcattcaaaatatcaaacttaatttatttcatacatcataacaacattacataagttttca |
27321198 |
T |
|
| Q |
109 |
ttatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27321199 |
ttatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcat |
27321298 |
T |
|
| Q |
209 |
tctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgnnnnnnnctg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27321299 |
tctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgaaaaaaactg |
27321398 |
T |
|
| Q |
309 |
cactttcttctct |
321 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27321399 |
cactttcttctct |
27321411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 34173132 - 34173444
Alignment:
| Q |
9 |
acatcatcacaacaaatataactttattaggacaatatgtcattcaaaatatcaaacttaatttatttcatacatcataacaacattacataagttttca |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34173132 |
acatcataacaacaaatataactttattaggacaatatgtcattcaaaacatcaaacttaattcatttcatacatcataacaacattacataagttttca |
34173231 |
T |
|
| Q |
109 |
ttatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34173232 |
ttatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcat |
34173331 |
T |
|
| Q |
209 |
tctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgnnnnnnnctg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34173332 |
tctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgaaaaaaactg |
34173431 |
T |
|
| Q |
309 |
cactttcttctct |
321 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34173432 |
cactttcttctct |
34173444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 5028859 - 5029146
Alignment:
| Q |
11 |
atcatcacaacaaatataactttattaggacaatatgtcattcaaaatatcaaacttaatttatttcatacatcataacaacattacataagttttcatt |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5028859 |
atcataacaacaaatataactttattaggacaatatgtcattcaaaacatcaaacttaattcatttcatacatcataacaacattacataagttttcatt |
5028958 |
T |
|
| Q |
111 |
atataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5028959 |
atataatagcactacataacttatccaagcttaatcaaaatgacaaaaacattaacaaacaacaacattcctaaaattacaatagtaaacacaagcattc |
5029058 |
T |
|
| Q |
211 |
tctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacg |
298 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5029059 |
tctccttattcttcaatgcatcattcttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacg |
5029146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 120 - 321
Target Start/End: Complemental strand, 52277143 - 52276942
Alignment:
| Q |
120 |
cactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttat |
219 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||| | |||| |||| |
|
|
| T |
52277143 |
cactacataacttatccaaactttatgataattaccaacacacttacaaacaacaacattcctaaaataacaatagttaacacaagcaatttctccttat |
52277044 |
T |
|
| Q |
220 |
tcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgnnnnnnnctgcactttcttct |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
52277043 |
tcttcaatgcatcattcttctttaacagtcctctaattactttcttctgcctatcaggaacttctggatcaaaccatcggaaaaaactgcactttcttct |
52276944 |
T |
|
| Q |
320 |
ct |
321 |
Q |
| |
|
|| |
|
|
| T |
52276943 |
ct |
52276942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 120 - 321
Target Start/End: Complemental strand, 18443455 - 18443254
Alignment:
| Q |
120 |
cactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttat |
219 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||| | |||| |||| |
|
|
| T |
18443455 |
cactacataacttatccaaactttatgataattaccaacacacttacaaacaacaacattcctaaaataacaatagttaacacaagcaatttctccttat |
18443356 |
T |
|
| Q |
220 |
tcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgnnnnnnnctgcactttcttct |
319 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||||||||| |||||||||||| | ||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
18443355 |
tcttcaatgcatcattcttctttagcagtcctctaattactttcttctgcctatcaggaacttctggatcaaaccatcggaaaaaactgcactttcttct |
18443256 |
T |
|
| Q |
320 |
ct |
321 |
Q |
| |
|
|| |
|
|
| T |
18443255 |
ct |
18443254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 295
Target Start/End: Complemental strand, 48054013 - 48053843
Alignment:
| Q |
125 |
cataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttc |
224 |
Q |
| |
|
||||| ||| ||||||||||| ||||| || || | ||| | |||||||||||| ||||||| |||||| || ||| | | | || |||| || |||||| |
|
|
| T |
48054013 |
cataagttaaccaagcttaatgaaaatcacaaacaaacttaaaaacaacaacatccctaaaactacaattgttaactccaactttttctccttcttcttc |
48053914 |
T |
|
| Q |
225 |
aatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaacca |
295 |
Q |
| |
|
| || |||||| ||||| || || |||||||||| |||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
48053913 |
attgaatcattcttcttcaaaagtcctctaattaatttcttctgcctctcaggcacttctggatcaaacca |
48053843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 14876073 - 14876384
Alignment:
| Q |
9 |
acatcatcacaacaaatataactttattaggacaatatgtcattcaaaatatcaaacttaatttatttcatacatcataacaacattacataagttttca |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14876073 |
acatcataacaacaaatataactttattatgacaata-gtcattcaaaacatcaaacttaattcatttcatacatcataacaacattacataagttttca |
14876171 |
T |
|
| Q |
109 |
ttatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcat |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14876172 |
atacataatagcactacataacttatccaagcttaatcaaaatcaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcat |
14876271 |
T |
|
| Q |
209 |
tctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgnnnnnnnctg |
308 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14876272 |
tctctccttattcttcaatgcatcattcttctttaacagccctctaattaatttcttctgcctttgaggaacttctggatcaaaccaacgaaaaaaactg |
14876371 |
T |
|
| Q |
309 |
cactttcttctct |
321 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14876372 |
cactttcttctct |
14876384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 19711609 - 19711671
Alignment:
| Q |
208 |
ttctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcc |
270 |
Q |
| |
|
|||| ||||| ||||||||| ||||||| ||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
19711609 |
ttctttctttcttcttcaattcatcattcttccttaacagtgctcaaattattttcttctgcc |
19711671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0241 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0241
Description:
Target: scaffold0241; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 8560 - 8269
Alignment:
| Q |
9 |
acatcatcacaacaaatataactttattaggacaatatgtcattcaaaatatcaaacttaa-----tttatttcatacatcataacaacattacataagt |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
8560 |
acatcataacaacaaatataactttattaggaca--aagtcattcaaaacatcaaacttaattcatttcatttcatacatcataacaacattacataagt |
8463 |
T |
|
| Q |
104 |
tttcattatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacaca |
203 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8462 |
tttcattacataatagcactacataacttatccaagcttaatcaaaatcaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacaaa |
8363 |
T |
|
| Q |
204 |
agcattctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaac |
297 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8362 |
agcattctctccttattcttcaaagcatcattcttctttaacagccctctaattattttcttctgcctttgaggaaattctggatcaaaccaac |
8269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 38112 - 37794
Alignment:
| Q |
9 |
acatcatcacaacaaatataactttattaggacaatatgtcattcaaaatatcaaacttaatttatt----tcat-----acatcataacaacattacat |
99 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| ||| |||||| ||||||||||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
38112 |
acatcataacaacaaacataactttattaggacaatat-tcaatcaaaacatcaaacttaattcattcatttcattttttacatcataacaacattacat |
38014 |
T |
|
| Q |
100 |
aagttttcattatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaa |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38013 |
aagttttcattacataatagcactacataacttatccaagcttaatcaaaatcaccaacacactaacaaacaacaacattcctaaaattacaatagt--a |
37916 |
T |
|
| Q |
200 |
cacaagcattctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgn |
299 |
Q |
| |
|
|||||||||| |||| ||||||||| || ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
37915 |
cacaagcattttctccttattcttctattcatcattcttctttaacatgcctctaattattttcttctgcctttgaggaacttctagatcgaaccaacga |
37816 |
T |
|
| Q |
300 |
nnnnnnctgcactttcttctct |
321 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37815 |
aaaaaactgcactttcttctct |
37794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 1616 - 1933
Alignment:
| Q |
9 |
acatcatcacaacaaatataactttattaggacaatatgtcattcaaaatatcaaacttaatttatt---------tcatacatcataacaacattacat |
99 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| ||| |||||| ||||||||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
1616 |
acatcataacaacaaacataactttattaggacaataa-tcaatcaaaacatcaaacttaattcattcatttcatttcttacatcataacaacattacat |
1714 |
T |
|
| Q |
100 |
aagttttcattatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaa |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
1715 |
aagttttcattacataatagcactacataacttatccaagcttaatcaaagtcaccaacacactaacaaacaccaacattcctaaaattacaatagt--a |
1812 |
T |
|
| Q |
200 |
cacaagcattctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgn |
299 |
Q |
| |
|
|||||||||| | || ||||||||| || |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1813 |
cacaagcattttatccttattcttctattgatcattcttctttaacaggcctctaattattttcttctgcctttgaggaacttctggatcgaaccaacga |
1912 |
T |
|
| Q |
300 |
nnnnnnctgcactttcttctc |
320 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1913 |
aaaaaactgcactttcttctc |
1933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 6239 - 6556
Alignment:
| Q |
9 |
acatcatcacaacaaatataactttattaggacaatatgtcattcaaaatatcaaacttaatttatt---------tcatacatcataacaacattacat |
99 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| ||| |||||| ||||||||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
6239 |
acatcataacaacaaacataactttattaggacaataa-tcaatcaaaacatcaaacttaattcattcatttcatttcttacatcataacaacattacat |
6337 |
T |
|
| Q |
100 |
aagttttcattatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaa |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
6338 |
aagttttcattacataatagcactacataacttatccaagcttaatcaaagtcaccaacacactaacaaacaccaacattcctaaaattacaatagt--a |
6435 |
T |
|
| Q |
200 |
cacaagcattctctctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgn |
299 |
Q |
| |
|
|||||||||| | || ||||||||| || |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6436 |
cacaagcattttatccttattcttctattgatcattcttctttaacaggcctctaattattttcttctgcctttgaggaacttctggatcgaaccaacga |
6535 |
T |
|
| Q |
300 |
nnnnnnctgcactttcttctc |
320 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6536 |
aaaaaactgcactttcttctc |
6556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0529 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: scaffold0529
Description:
Target: scaffold0529; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 9762 - 9567
Alignment:
| Q |
9 |
acatcatcacaacaaatataactttattaggacaatatgtcattcaaaatatcaaacttaa-----tttatttcatacatcataacaacattacataagt |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
9762 |
acatcataacaacaaatataactttattaggaca--aagtcattcaaaacatcaaacttaattcatttcatttcatacatcataacaacattacataagt |
9665 |
T |
|
| Q |
104 |
tttcattatataatagcactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaaca |
201 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9664 |
tttcattacataatagcactacataacttatccaagcttaatcaaaatcaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaaca |
9567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 123 - 298
Target Start/End: Original strand, 7987208 - 7987383
Alignment:
| Q |
123 |
tacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattct |
222 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||| || | || |||||| |
|
|
| T |
7987208 |
tacataacttatccaagcttaatgaaaatcaccaacacagtaacaaacaacaacattcctaaaattacaatagtcaacacaagccttttttccttattcg |
7987307 |
T |
|
| Q |
223 |
tcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacg |
298 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7987308 |
tcaatgcatcattcttcttcaacatgcctctaattattttcttctgcctttgaggaacttctggatcgaaccaacg |
7987383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 48 - 321
Target Start/End: Complemental strand, 31194971 - 31194682
Alignment:
| Q |
48 |
tcattcaaaatatcaaacttaatttatttcata-----catcataacaacattacataagttttcattatataatagca-----------ctacataact |
131 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
31194971 |
tcattcaaaacatcaaactcaattcatttcatttcttgcatcataacaacattacataagttttcattacataatagcaatgtaacatcactacataact |
31194872 |
T |
|
| Q |
132 |
tatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgcat |
231 |
Q |
| |
|
|||||||| ||||| | ||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||| |||| || ||||||||||||| |
|
|
| T |
31194871 |
tatccaagtttaatgagaatcaccaacacactcacaaacaacaacattcctaaaattacaatagttaacaatagcattttctccttgttcttcaatgcat |
31194772 |
T |
|
| Q |
232 |
catttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgnnnnnnnctgcactttcttctct |
321 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||||||||| | ||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
31194771 |
cattcttctttaacaatcctctaattagtttcttctgcctatcaggaacttctggatcgaaccatcgaaaaaaactgcactttcttctct |
31194682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 295
Target Start/End: Complemental strand, 17505707 - 17505582
Alignment:
| Q |
171 |
aacaacattcctaaaattacaatagtaaacacaagcattctct-ctttattcttcaatgcatcatttttctttaacagccctctaattattttcttctgc |
269 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||| | | | || ||||||||||||||||| || ||||| || |||||||| | |||||||||| |
|
|
| T |
17505707 |
aacaacatacctaaaattacaattgttaacacaagcatttttttccttgttcttcaatgcatcattcttgtttaatagacctctaatcagtttcttctgc |
17505608 |
T |
|
| Q |
270 |
ctttgaggaacttctggatcaaacca |
295 |
Q |
| |
|
|| | ||||||||||||||||||||| |
|
|
| T |
17505607 |
ctctcaggaacttctggatcaaacca |
17505582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 120 - 321
Target Start/End: Original strand, 38979312 - 38979513
Alignment:
| Q |
120 |
cactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttat |
219 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||| | |||| |||| |
|
|
| T |
38979312 |
cactacataacttatccaaactttatgataattaccaacacacttacaaacaacaacattcctaaaataacaatagttaacacaagcaatttctccttat |
38979411 |
T |
|
| Q |
220 |
tcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgnnnnnnnctgcactttcttct |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||| |||||||||||| | ||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
38979412 |
tcttcaatgcatcattcttctttaacagtcctttaattactttcttctgcctatcaggaacttctggatcaaaccatcggaaaaaactgcactttcttct |
38979511 |
T |
|
| Q |
320 |
ct |
321 |
Q |
| |
|
|| |
|
|
| T |
38979512 |
ct |
38979513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 120 - 321
Target Start/End: Original strand, 39010409 - 39010610
Alignment:
| Q |
120 |
cactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttat |
219 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||| | |||| |||| |
|
|
| T |
39010409 |
cactacataacttatccaaactttatgataattaccaacacacttacaaacaacaacattcctaaaataacaatagttaacacaagcaatttctccttat |
39010508 |
T |
|
| Q |
220 |
tcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacgnnnnnnnctgcactttcttct |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||| |||||||||||| | ||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
39010509 |
tcttcaatgcatcattcttctttaacagtcctttaattactttcttctgcctatcaggaacttctggatcaaaccatcggaaaaaactgcactttcttct |
39010608 |
T |
|
| Q |
320 |
ct |
321 |
Q |
| |
|
|| |
|
|
| T |
39010609 |
ct |
39010610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 120 - 295
Target Start/End: Original strand, 32973194 - 32973369
Alignment:
| Q |
120 |
cactacataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttat |
219 |
Q |
| |
|
||||||||||||||||||| ||| || | ||| ||||| ||||| |||||||||||||||||||| | |||||||| |||||||||| | || |||| |
|
|
| T |
32973194 |
cactacataacttatccaaactttatgagaattaccaacacacttacaaacaacaacattcctaacagaacaatagttaacacaagcaatttcaacttat |
32973293 |
T |
|
| Q |
220 |
tcttcaatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaacca |
295 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||||| ||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
32973294 |
tcttcaatgcatcattcttctttaacagtcatctaattagtttaatctgcctatcaggaacttctggatcaaacca |
32973369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 295
Target Start/End: Complemental strand, 8062685 - 8062525
Alignment:
| Q |
135 |
ccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgcatcat |
234 |
Q |
| |
|
||||||||||| ||||| || || | ||| | |||||||||||| ||||||| |||||| |||||| | | | || |||| || ||||||| |||||||| |
|
|
| T |
8062685 |
ccaagcttaatgaaaatcacaaacaaacttaaaaacaacaacatccctaaaactacaattgtaaactccaactttttctccttcttcttcattgcatcat |
8062586 |
T |
|
| Q |
235 |
ttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaacca |
295 |
Q |
| |
|
| ||||| || || |||||||||| |||||||||||| | || ||||||||||||||||| |
|
|
| T |
8062585 |
tcttcttcaaaagtcctctaattaatttcttctgcctctcgggcacttctggatcaaacca |
8062525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 182537 - 182601
Alignment:
| Q |
234 |
tttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacg |
298 |
Q |
| |
|
|||||||| |||| ||| ||||| ||||||||||| || | |||||||| |||||||||||||| |
|
|
| T |
182537 |
tttttcttcaacaacccactaatgattttcttctgtctatctggaacttcaggatcaaaccaacg |
182601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 135 - 295
Target Start/End: Original strand, 1394083 - 1394243
Alignment:
| Q |
135 |
ccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttcaatgcatcat |
234 |
Q |
| |
|
||||||||||| ||||| || || | ||| | |||||||||||| ||||||| |||||| |||||| | | | || |||| || ||||||| |||||||| |
|
|
| T |
1394083 |
ccaagcttaatgaaaatcacaaacaaacttaaaaacaacaacatccctaaaactacaattgtaaactccaactttttctccttcttcttcattgcatcat |
1394182 |
T |
|
| Q |
235 |
ttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaacca |
295 |
Q |
| |
|
| ||||| || || |||||||||| ||||||| |||| | || ||||||||||||||||| |
|
|
| T |
1394183 |
tcttcttcaaaagtcctctaattaatttcttccgcctctcgggcacttctggatcaaacca |
1394243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 295
Target Start/End: Complemental strand, 28848153 - 28847983
Alignment:
| Q |
125 |
cataacttatccaagcttaatcaaaatgaccaaaacactaacaaacaacaacattcctaaaattacaatagtaaacacaagcattctctctttattcttc |
224 |
Q |
| |
|
||||| ||| ||||||||||| ||||| || || | ||| | |||||||||||| ||||||| |||||| || ||| | | | || || || |||||| |
|
|
| T |
28848153 |
cataagttaaccaagcttaatgaaaatcacaaacaaacttaaaaacaacaacatccctaaaactacaattgttaactccaactttttcgtcttcttcttc |
28848054 |
T |
|
| Q |
225 |
aatgcatcatttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaacca |
295 |
Q |
| |
|
| ||||||||| ||||| || || |||||| ||| |||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
28848053 |
attgcatcattcttcttcaaaagtcctctagttaatttcttctgcctctcaggcacttctggatcaaacca |
28847983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 26069623 - 26069559
Alignment:
| Q |
234 |
tttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacg |
298 |
Q |
| |
|
|||||||| |||| ||| ||||| ||||||||||| || | |||||||| |||||||||||||| |
|
|
| T |
26069623 |
tttttcttcaacatcccactaatgattttcttctgtctatctggaacttcaggatcaaaccaacg |
26069559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Complemental strand, 269147 - 269083
Alignment:
| Q |
234 |
tttttctttaacagccctctaattattttcttctgcctttgaggaacttctggatcaaaccaacg |
298 |
Q |
| |
|
|||||||| |||| ||| ||||| ||||||||||| || | |||||||| |||||||||||||| |
|
|
| T |
269147 |
tttttcttcaacatcccactaatgattttcttctgtctatctggaacttcaggatcaaaccaacg |
269083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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