View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16143_high_12 (Length: 299)

Name: NF16143_high_12
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16143_high_12
NF16143_high_12
[»] chr1 (35 HSPs)
chr1 (1-295)||(28262492-28262786)
chr1 (122-192)||(38867825-38867895)
chr1 (124-196)||(27140480-27140552)
chr1 (137-196)||(15558219-15558278)
chr1 (125-196)||(22810625-22810696)
chr1 (124-199)||(27963366-27963441)
chr1 (102-196)||(34290238-34290335)
chr1 (125-191)||(39777670-39777736)
chr1 (122-218)||(15579461-15579558)
chr1 (124-192)||(11639412-11639480)
chr1 (124-196)||(27887114-27887186)
chr1 (144-196)||(35179141-35179193)
chr1 (132-192)||(35668978-35669038)
chr1 (137-196)||(6102156-6102215)
chr1 (130-189)||(6279408-6279467)
chr1 (122-165)||(11211151-11211194)
chr1 (124-191)||(12564495-12564562)
chr1 (125-196)||(16981933-16982004)
chr1 (130-196)||(6231818-6231884)
chr1 (122-168)||(17420233-17420279)
chr1 (130-195)||(4768831-4768896)
chr1 (125-166)||(28935873-28935914)
chr1 (62-166)||(31517671-31517778)
chr1 (125-166)||(32859943-32859984)
chr1 (138-195)||(33722411-33722468)
chr1 (124-201)||(37811849-37811926)
chr1 (122-191)||(45205075-45205144)
chr1 (137-178)||(47885042-47885083)
chr1 (123-191)||(3224430-3224498)
chr1 (144-196)||(5047148-5047200)
chr1 (152-196)||(5924057-5924101)
chr1 (124-196)||(7136994-7137066)
chr1 (124-164)||(12477283-12477323)
chr1 (138-186)||(14128484-14128532)
chr1 (1-57)||(24460322-24460378)
[»] chr7 (15 HSPs)
chr7 (127-217)||(38010694-38010785)
chr7 (122-196)||(12110362-12110436)
chr7 (132-191)||(46056014-46056073)
chr7 (130-196)||(24363603-24363669)
chr7 (124-166)||(29287259-29287301)
chr7 (122-192)||(33645955-33646024)
chr7 (124-170)||(39280997-39281043)
chr7 (123-196)||(4966158-4966231)
chr7 (146-187)||(8690416-8690457)
chr7 (131-196)||(40530412-40530477)
chr7 (63-124)||(42839911-42839972)
chr7 (147-184)||(47517938-47517975)
chr7 (132-196)||(2825235-2825299)
chr7 (153-225)||(8089134-8089206)
chr7 (124-188)||(27626119-27626183)
[»] chr2 (23 HSPs)
chr2 (127-217)||(22681184-22681275)
chr2 (122-191)||(43065444-43065513)
chr2 (133-191)||(35993385-35993443)
chr2 (1-56)||(15370244-15370299)
chr2 (122-189)||(42131626-42131693)
chr2 (130-196)||(36415675-36415741)
chr2 (124-216)||(29316771-29316864)
chr2 (122-190)||(10285868-10285936)
chr2 (122-166)||(41809239-41809283)
chr2 (124-178)||(5781689-5781743)
chr2 (146-223)||(11513872-11513950)
chr2 (138-192)||(27288637-27288691)
chr2 (122-192)||(32821815-32821885)
chr2 (144-216)||(9395111-9395184)
chr2 (125-166)||(11063520-11063561)
chr2 (122-218)||(13869089-13869186)
chr2 (122-170)||(38388714-38388763)
chr2 (122-191)||(44606104-44606173)
chr2 (130-166)||(1160673-1160709)
chr2 (145-201)||(4026814-4026870)
chr2 (61-192)||(8017440-8017574)
chr2 (122-189)||(30552637-30552705)
chr2 (124-196)||(44438835-44438907)
[»] chr5 (19 HSPs)
chr5 (124-216)||(41957447-41957540)
chr5 (122-196)||(18704030-18704104)
chr5 (124-166)||(13194833-13194875)
chr5 (125-196)||(19138714-19138787)
chr5 (122-196)||(32172655-32172729)
chr5 (143-196)||(1084136-1084189)
chr5 (146-195)||(36638750-36638799)
chr5 (124-197)||(40205070-40205143)
chr5 (124-196)||(13604845-13604917)
chr5 (132-184)||(42582510-42582562)
chr5 (137-196)||(14182390-14182448)
chr5 (146-196)||(8481220-8481270)
chr5 (151-196)||(9202771-9202816)
chr5 (122-159)||(30269727-30269764)
chr5 (143-196)||(39594809-39594862)
chr5 (144-196)||(4014440-4014492)
chr5 (132-192)||(10280602-10280662)
chr5 (124-196)||(16863782-16863854)
chr5 (130-166)||(35963273-35963309)
[»] chr3 (17 HSPs)
chr3 (122-192)||(37273140-37273210)
chr3 (131-196)||(237399-237464)
chr3 (124-216)||(1217796-1217889)
chr3 (124-196)||(39602206-39602278)
chr3 (130-216)||(48286812-48286899)
chr3 (122-196)||(43115058-43115132)
chr3 (122-195)||(31010405-31010478)
chr3 (124-189)||(43397836-43397901)
chr3 (124-192)||(54180776-54180844)
chr3 (125-196)||(2128255-2128326)
chr3 (124-191)||(24785212-24785279)
chr3 (128-166)||(21862175-21862213)
chr3 (122-184)||(36200110-36200172)
chr3 (125-191)||(45432936-45433002)
chr3 (135-192)||(12985352-12985409)
chr3 (144-196)||(41644461-41644513)
chr3 (145-189)||(44488892-44488936)
[»] chr6 (22 HSPs)
chr6 (138-185)||(1408277-1408324)
chr6 (122-196)||(281842-281916)
chr6 (122-164)||(1019604-1019646)
chr6 (126-196)||(14492304-14492374)
chr6 (131-196)||(2117405-2117470)
chr6 (124-165)||(34939777-34939818)
chr6 (1-56)||(26559160-26559215)
chr6 (124-191)||(32386559-32386626)
chr6 (144-218)||(33787761-33787836)
chr6 (122-196)||(738674-738748)
chr6 (122-192)||(4324447-4324517)
chr6 (125-187)||(30523948-30524010)
chr6 (124-196)||(1275151-1275224)
chr6 (123-196)||(9732478-9732551)
chr6 (144-189)||(10017505-10017550)
chr6 (122-166)||(6536979-6537023)
chr6 (143-191)||(7931804-7931852)
chr6 (122-166)||(9027610-9027654)
chr6 (130-166)||(27909640-27909676)
chr6 (134-162)||(32376898-32376926)
chr6 (124-196)||(32386102-32386174)
chr6 (125-196)||(33500477-33500549)
[»] chr8 (23 HSPs)
chr8 (130-196)||(30277247-30277313)
chr8 (125-194)||(2235653-2235722)
chr8 (120-165)||(2492969-2493014)
chr8 (122-191)||(4055610-4055679)
chr8 (124-212)||(11795077-11795166)
chr8 (133-196)||(4558800-4558863)
chr8 (133-196)||(8062331-8062394)
chr8 (122-165)||(25869260-25869303)
chr8 (133-196)||(30013220-30013283)
chr8 (130-193)||(30389104-30389167)
chr8 (62-170)||(3536876-3536987)
chr8 (121-218)||(38874625-38874723)
chr8 (65-157)||(9572911-9573006)
chr8 (126-191)||(26284793-26284858)
chr8 (130-182)||(6950338-6950390)
chr8 (124-196)||(11569453-11569525)
chr8 (122-166)||(13000418-13000462)
chr8 (144-196)||(14247240-14247292)
chr8 (1-57)||(14926903-14926959)
chr8 (132-196)||(28769343-28769407)
chr8 (144-196)||(31862495-31862547)
chr8 (122-166)||(43704370-43704414)
chr8 (130-170)||(44401589-44401629)
[»] chr4 (15 HSPs)
chr4 (130-196)||(7694012-7694078)
chr4 (122-196)||(11264303-11264377)
chr4 (146-196)||(26747420-26747470)
chr4 (138-193)||(35064860-35064915)
chr4 (131-225)||(43824255-43824350)
chr4 (122-165)||(55547038-55547081)
chr4 (122-184)||(21952962-21953024)
chr4 (122-196)||(50800024-50800097)
chr4 (143-192)||(18628558-18628607)
chr4 (144-193)||(31006023-31006072)
chr4 (61-90)||(34430628-34430657)
chr4 (131-191)||(8468955-8469015)
chr4 (125-189)||(8469374-8469438)
chr4 (136-196)||(11158365-11158425)
chr4 (132-192)||(53673662-53673722)
[»] scaffold0159 (1 HSPs)
scaffold0159 (124-178)||(27021-27075)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 28262492 - 28262786
Alignment:
Q  1 tttggattgacttatttgagcttacgtactggtatgagcatttgtgatactgtttgatgtacttatttgagcttatttactagcataagtatttttgcga 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  28262492 tttggattgacttatttgagcttacgtactggtacgagcatttgtgatactgtttgatgtacttatttgagcttatttactaacatcagtatttttgcga 28262591  T
Q  101 ttatttgggagaatttaccaaaacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttagaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28262592 ttatttgggagaatttaccaaaacttataacatgtccataaattgtttttagcttatttccataagttctataggataacttatgaaaacagcttagaat 28262691  T
Q  201 tagatgaaaacaatttgagtttaatagtgtatacataagcacttagaggatacatacacacttatgctatacgcacttccttgcttctgattcat 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28262692 tagatgaaaacaatttgagtttaatagtgtatacataagcacttagatgatacatacacacttatgctatacgcacttccttgcttctgattcat 28262786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 38867825 - 38867895
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    ||||||| | |||||||| | ||||||||||||||||| ||||||||||  | ||||||||||||||||||    
T  38867825 aacttatgatatgtccatcagttgtttttagcttattttcataagttcttcaagataacttatgaaaacag 38867895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 27140552 - 27140480
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| |||||||||||| ||||||| ||||||||| |||||| |||  |||||| ||||| |||||||||||    
T  27140552 cttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagctta 27140480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 15558278 - 15558219
Alignment:
Q  137 cataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| ||||||| |||||||||| ||||||||| || |||| |||||||||||||||||    
T  15558278 cataagttgttttcagcttatttctataagttctctaggatatcttatgaaaacagctta 15558219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 22810625 - 22810696
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| ||||| ||||  |||||| | ||||||||| |||||||| |||||||||||||||||||| ||||    
T  22810625 ttataatatgtctataagctgttttgaccttatttccgtaagttctctatgataacttatgaaaacaactta 22810696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 27963366 - 27963441
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttagaa 199  Q
    ||||| |||||||||||| |||||||||||||||||  ||||| |||  || ||| |||||||||||| |||||||    
T  27963366 cttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaacaacttagaa 27963441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 34290335 - 34290238
Alignment:
Q  102 tatttgggagaatttaccaaaa---cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||||||||||||  ||||   ||||| |||| | ||||| ||||||| ||||||||| ||||||||||  | |||| |||||||||||||||||    
T  34290335 tatttgggagaatttattaaaaaagcttatgacatattcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagctta 34290238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 39777736 - 39777670
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    |||||||||||||||||  |||||||||||||||||| |||| |||  || |||||||| |||||||    
T  39777736 ttataacatgtccataagatgtttttagcttatttccttaagctcttcattataacttaagaaaaca 39777670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 15579558 - 15579461
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttaga-attagatgaaaacaatttga 218  Q
    ||||||| |||||||||||| ||||| | |||||||||||||||  || | |||||| |||| || ||||||||| |  ||| |||||||||||||||    
T  15579558 aacttatgacatgtccataagttgttctcagcttatttccataaactcaacatgatagcttacgagaacagcttatagcttacatgaaaacaatttga 15579461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 11639412 - 11639480
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    ||||| ||||||||||||  |||||||||||||||| |||||| ||| ||  |||||||||| ||||||    
T  11639412 cttatgacatgtccataagctgtttttagcttattttcataagctctctagaataacttatgcaaacag 11639480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 27887114 - 27887186
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| ||||||||||||||||||||||||||||||  ||| | |||  ||||||  ||||||||||| ||||    
T  27887114 cttatgacatgtccataaattgtttttagcttatttttatatgctctccatgatagtttatgaaaacaactta 27887186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 35179193 - 35179141
Alignment:
Q  144 tgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| ||||||||| ||||||||||  || |||||||||||||||||||||    
T  35179193 tgttttcagcttattttcataagttctccataataacttatgaaaacagctta 35179141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 35669038 - 35668978
Alignment:
Q  132 atgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    |||||||||||||||||| | ||||||||||||| || || | ||||| ||||||||||||    
T  35669038 atgtccataaattgttttcaacttatttccataaattttacaggataagttatgaaaacag 35668978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 6102215 - 6102156
Alignment:
Q  137 cataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||||||||| ||||||||||||||| ||||    |||| |||||||||||||||||    
T  6102215 cataaattgttttcagcttatttccataaattctcccagatagcttatgaaaacagctta 6102156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 6279467 - 6279408
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaa 189  Q
    |||||||||||| ||||||| ||| |||||||||||| ||| || |||| ||||||||||    
T  6279467 acatgtccataagttgttttcagcgtatttccataagctctctaggatagcttatgaaaa 6279408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 11211194 - 11211151
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataa 165  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||    
T  11211194 aacttatagcatgtccataagttgtttttaacttatttccataa 11211151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 12564495 - 12564562
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||| ||| ||| |||| ||||||| ||||||||||||||||||||  | |||| ||||||||||||    
T  12564495 cttatgacaagtcaataagttgttttcagcttatttccataagttctccaagatagcttatgaaaaca 12564562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 16981933 - 16982004
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||| |||||||||||| |||||||||||||||||  ||||| |||  |||||| ||||||| |||| ||||    
T  16981933 ttatgacatgtccataagttgtttttagcttatttatataagctctccatgatagcttatgataacatctta 16982004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 6231818 - 6231884
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||||||||| |||||| |||||||||| |||||||||  | | || |||| ||||||||||||    
T  6231818 acatgtccataaactgttttcagcttatttctataagttcttcaggttagcttacgaaaacagctta 6231884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 17420279 - 17420233
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagtt 168  Q
    ||||||| |||||||||||||||||||| | ||||||||||| ||||    
T  17420279 aacttattacatgtccataaattgttttcaacttatttccattagtt 17420233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 4768831 - 4768896
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctt 195  Q
    |||||||||||| ||||||| ||||||||||||||| ||||  | |||| | |||||||| |||||    
T  4768831 acatgtccataacttgttttcagcttatttccataaattctccaagatatcatatgaaaatagctt 4768896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 28935873 - 28935914
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataag 166  Q
    |||| |||||||||||| || |||||||||||||||||||||    
T  28935873 ttatgacatgtccataagttttttttagcttatttccataag 28935914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 31517671 - 31517778
Alignment:
Q  62 cttatttgagcttatttactagcataagtatttttgcgattatttgggagaatttaccaa---aacttataacatgtccataaattgtttttagcttatt 158  Q
    |||||||||||||||||||| ||||||| | || || || | |||||||||| ||| |||   |||| || |||||| |||||  |||||| ||||||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttatt 31517770  T
Q  159 tccataag 166  Q
    | ||||||    
T  31517771 ttcataag 31517778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 32859943 - 32859984
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataag 166  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||    
T  32859943 ttataacatgttcataaattgttttcagcttgtttccataag 32859984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 33722411 - 33722468
Alignment:
Q  138 ataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctt 195  Q
    |||| ||||||| |||||||||||||||  ||| || ||||||||||||||| |||||    
T  33722411 ataagttgttttcagcttatttccataacctctgtaggataacttatgaaaaaagctt 33722468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 37811926 - 37811849
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttagaatt 201  Q
    ||||| |||||| |||||| |||||| | ||||||||||| || |||  |||||  ||||||||||||||||| ||||    
T  37811926 cttatgacatgttcataaactgttttcaacttatttccattagctctccatgatggcttatgaaaacagcttacaatt 37811849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Complemental strand, 45205144 - 45205075
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||||| | |||||| ||| ||||||| ||||||||||||| |  |||| |||||| ||||||||||||    
T  45205144 aacttatgatatgtccctaagttgttttcagcttatttccatgaactctacatgatagcttatgaaaaca 45205075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 47885042 - 47885083
Alignment:
Q  137 cataaattgtttttagcttatttccataagttctatatgata 178  Q
    ||||| ||||||| |||||||||||||||||||| |||||||    
T  47885042 cataagttgttttcagcttatttccataagttctctatgata 47885083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 3224498 - 3224430
Alignment:
Q  123 acttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    |||||| |||||||||||| ||||| | ||||||||| |||||||||| ||  ||| ||||| ||||||    
T  3224498 acttatgacatgtccataagttgttctcagcttattttcataagttctctagaatagcttataaaaaca 3224430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 5047200 - 5047148
Alignment:
Q  144 tgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| |||||||||||||||| |||  |||||| |||||||||| ||||||    
T  5047200 tgttttcagcttatttccataagctcttcatgatagcttatgaaaaaagctta 5047148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 5924101 - 5924057
Alignment:
Q  152 gcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||||||||||| ||| || ||||||||||||||||| ||||    
T  5924101 gcttatttccataagctctctaggataacttatgaaaacaactta 5924057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 7136994 - 7137066
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| |||| | ||||| || |||| ||||||||| ||||||||||  | |||| |||||||||||||||||    
T  7136994 cttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagctta 7137066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 12477283 - 12477323
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccata 164  Q
    ||||| |||||||||||| ||||||| ||||||||||||||    
T  12477283 cttatgacatgtccataagttgttttcagcttatttccata 12477323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 14128484 - 14128532
Alignment:
Q  138 ataaattgtttttagcttatttccataagttctatatgataacttatga 186  Q
    |||||||| ||| |||||||||||||||| ||| || ||||||||||||    
T  14128484 ataaattgctttcagcttatttccataagctctttaggataacttatga 14128532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 24460322 - 24460378
Alignment:
Q  1 tttggattgacttatttgagcttacgtactggtatgagcatttgtgatactgtttga 57  Q
    ||||||||||||||||||| ||||  |||||  ||||||| |||||| |||||||||    
T  24460322 tttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttga 24460378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 38010785 - 38010694
Alignment:
Q  127 ataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttaga-attagatgaaaacaatttg 217  Q
    ||||||||| |||||  ||||||||||||||||||||||||||| || ||||  |||||||||||||||| |  ||| ||||||||||||||    
T  38010785 ataacatgttcataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttg 38010694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 12110436 - 12110362
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||| |||||| || ||| ||||||||| |||||| ||||||||||  | |||| |||||||||||||||||    
T  12110436 aacttatgacatgttcacaaactgtttttagattattttcataagttcttcaagatagcttatgaaaacagctta 12110362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 46056014 - 46056073
Alignment:
Q  132 atgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||||||||  ||||||||||||||||||||||| ||||   |||| ||||||||||||    
T  46056014 atgtccataatatgtttttagcttatttccataagctctacgggatagcttatgaaaaca 46056073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 24363603 - 24363669
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||||||||| ||||||| |||||||||||||||  |||  | |||| |||||||||||| ||||    
T  24363603 acatgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaactta 24363669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 29287301 - 29287259
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataag 166  Q
    ||||| ||||||||||||||||||||| |||||||||| ||||    
T  29287301 cttatgacatgtccataaattgtttttggcttatttccttaag 29287259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 33645955 - 33646024
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    ||||||| ||||||| |||| |||||||||| ||||||||||||| |||  | |||| |||||||||||||    
T  33645955 aacttatgacatgtctataagttgtttttaggttatttccataagctctcca-gatagcttatgaaaacag 33646024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 39281043 - 39280997
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttct 170  Q
    ||||||| |||||||||| ||||||| |||||||||||||| |||||    
T  39281043 cttataatatgtccataagttgttttcagcttatttccatatgttct 39280997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 4966231 - 4966158
Alignment:
Q  123 acttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| | |||||||||| ||||||| || ||||||||||||| |||  | |||  |||||||||||||||||    
T  4966231 acttatgatatgtccataagttgttttcagtttatttccataagctcttcaggatggcttatgaaaacagctta 4966158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 8690416 - 8690457
Alignment:
Q  146 tttttagcttatttccataagttctatatgataacttatgaa 187  Q
    ||||| ||||||||||||||||||| || |||||||||||||    
T  8690416 tttttggcttatttccataagttctctaggataacttatgaa 8690457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 40530412 - 40530477
Alignment:
Q  131 catgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| |||||||||||| | ||||||| |||||||||| || |||| ||||| |||||| ||||    
T  40530412 catgtctataaattgttttcaacttattttcataagttctttaggatagcttattaaaacaactta 40530477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 42839911 - 42839972
Alignment:
Q  63 ttatttgagcttatttactagcataagtatttttgcgattatttgggagaatttaccaaaac 124  Q
    ||||||||| |||| |||||||||||| | ||||| || ||||||||||| |||||| ||||    
T  42839911 ttatttgagattatgtactagcataagcacttttgagactatttgggagagtttaccgaaac 42839972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 47517975 - 47517938
Alignment:
Q  147 ttttagcttatttccataagttctatatgataacttat 184  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  47517975 ttttagcttattttcataagttctacatgataacttat 47517938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 2825235 - 2825299
Alignment:
Q  132 atgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||| ||||| || |||| |||||||||||||||||||| || |||| ||| |||||||| ||||    
T  2825235 atgttcataagttattttcagcttatttccataagttctctaggatagcttgtgaaaacaactta 2825299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 8089134 - 8089206
Alignment:
Q  153 cttatttccataagttctatatgataacttatgaaaacagcttagaattagatgaaaacaatttgagtttaat 225  Q
    ||||||||||||| |||| ||||||| ||||| ||||||||||| | |||| | ||| || ||||| ||||||    
T  8089134 cttatttccataatttctttatgatagcttatcaaaacagcttatacttaggtcaaagcagtttgactttaat 8089206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 27626119 - 27626183
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaa 188  Q
    ||||| ||||||||||||| |||||| | |||||||||||||| |||  |||||| |||| ||||    
T  27626119 cttatgacatgtccataaactgttttaaacttatttccataagctcttcatgatagcttaggaaa 27626183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 22681184 - 22681275
Alignment:
Q  127 ataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttaga-attagatgaaaacaatttg 217  Q
    ||||||||| |||||  ||||||||||||||||||||||||||| || ||||  |||||||||||||||| |  ||| ||||||||||||||    
T  22681184 ataacatgttcataagctgtttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaatttg 22681275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 43065444 - 43065513
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||| |||  | |||||||||||||||||    
T  43065444 aacttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaaca 43065513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 35993385 - 35993443
Alignment:
Q  133 tgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||| |||||| |||||    
T  35993385 tgtccataaattgttttcagcttattttcataagttctctatgatagcttatgcaaaca 35993443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15370244 - 15370299
Alignment:
Q  1 tttggattgacttatttgagcttacgtactggtatgagcatttgtgatactgtttg 56  Q
    ||||||||||||||||||||||||  |||||| || ||||||||||| ||||||||    
T  15370244 tttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttg 15370299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 42131693 - 42131626
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaa 189  Q
    ||||||||||||||||||||  || ||| ||||||||||| ||||||||  |||||| ||||||||||    
T  42131693 aacttataacatgtccataagctgctttaagcttatttccttaagttctccatgatagcttatgaaaa 42131626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 36415675 - 36415741
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| ||||| ||||||| | ||||||| | ||||||||| |||||| |||||||||||||||||    
T  36415675 acatgtgcataagttgttttcatcttattttcgtaagttctacatgatagcttatgaaaacagctta 36415741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 29316771 - 29316864
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttaga-attagatgaaaacaattt 216  Q
    ||||| |||||| ||||| || |||| ||||||||||||||||||||  | |||| || |||||||||||||| | ||||  ||||||||||||    
T  29316771 cttatgacatgttcataagttcttttcagcttatttccataagttctccaagatagctgatgaaaacagcttatagattatgtgaaaacaattt 29316864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 10285936 - 10285868
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaac 190  Q
    ||||||| ||||||||||||  |||||| | |||||||||||||||||| |||| || |||||| ||||    
T  10285936 aacttatgacatgtccataagctgttttcaacttatttccataagttctctatgttagcttatgcaaac 10285868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 41809239 - 41809283
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataag 166  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||    
T  41809239 aacttatgacatgttcataagttgtttttagcttatttccataag 41809283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 5781743 - 5781689
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgata 178  Q
    ||||| |||||| |||||| |||||| |||||||||||||||| ||| |||||||    
T  5781743 cttatgacatgtgcataaactgttttcagcttatttccataagctctctatgata 5781689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 11513950 - 11513872
Alignment:
Q  146 tttttagcttatttccataagttctatatgataacttatgaaaacagcttaga-attagatgaaaacaatttgagttta 223  Q
    |||| |||||||||||| |||||||  |||||| |||||||||||| |||| |  ||| ||||||||||||||| ||||    
T  11513950 ttttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttatagcttatatgaaaacaatttgacttta 11513872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 27288691 - 27288637
Alignment:
Q  138 ataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    |||| ||||||| ||||||||||| |||  |||| ||||||||||||||||||||    
T  27288691 ataagttgttttcagcttatttccgtaaactctacatgataacttatgaaaacag 27288637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 32821885 - 32821815
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    ||||||| ||||||||||||  |||||| || ||||||| ||||| ||| || |||| |||||||||||||    
T  32821885 aacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaacag 32821815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 9395184 - 9395111
Alignment:
Q  144 tgtttttagcttatttccataagttctatatgataacttatgaaaacagcttaga-attagatgaaaacaattt 216  Q
    |||||| ||||||||| |||||| |||| |  |||||| |||||||||||||| | |||| |||||||||||||    
T  9395184 tgttttcagcttattttcataagctctacagaataactaatgaaaacagcttatagattatatgaaaacaattt 9395111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 11063561 - 11063520
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataag 166  Q
    |||| |||||||||||| ||||||||||||||||| ||||||    
T  11063561 ttatgacatgtccataagttgtttttagcttattttcataag 11063520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 13869089 - 13869186
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttaga-attagatgaaaacaatttga 218  Q
    ||||||| ||| ||| |||| ||||||| |  |||||| ||| ||||||  | |||||||||||||||||||||| |  ||||||||||| |||||||    
T  13869089 aacttatgacaagtctataagttgttttcaaattattttcattagttctccaggataacttatgaaaacagcttatagcttagatgaaaataatttga 13869186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 38388763 - 38388714
Alignment:
Q  122 aacttataacatgtccataaattgttttt-agcttatttccataagttct 170  Q
    ||||||| |||||| |||||| ||||||| ||||||||||||||||||||    
T  38388763 aacttatgacatgttcataaactgtttttcagcttatttccataagttct 38388714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 44606104 - 44606173
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||||| |||||||||||| ||||||| |||| |||| |||||||  | ||  ||||||||||||||||    
T  44606104 aacttatgacatgtccataagttgttttcagctgattttcataagtgttttagaataacttatgaaaaca 44606173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 1160673 - 1160709
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataag 166  Q
    |||||||||||| |||||||||| |||||||||||||    
T  1160673 acatgtccataagttgtttttagtttatttccataag 1160709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 4026870 - 4026814
Alignment:
Q  145 gtttttagcttatttccataagttctatatgataacttatgaaaacagcttagaatt 201  Q
    ||||| ||||||||| ||||||||||  | ||||| |||||||||||||||| ||||    
T  4026870 gttttcagcttattttcataagttcttcaggataatttatgaaaacagcttataatt 4026814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 192
Target Start/End: Complemental strand, 8017574 - 8017440
Alignment:
Q  61 acttatttgagcttatttactagcataagtatttttgcgattatttgggagaatttaccaaaac---ttataacatgtccataaattgtttttagcttat 157  Q
    ||||||||||| |||| || |  |||||| | || |||||||||||||||||| |||  |||||   |||| | |||| ||||| |||||||  || |||    
T  8017574 acttatttgaggttatctattgacataagcacttgtgcgattatttgggagaacttatgaaaacagcttatgatatgttcataatttgttttctgcgtat 8017475  T
Q  158 ttccataagttctatatgataacttatgaaaacag 192  Q
    || ||||||||||  | |||| |||||||||||||    
T  8017474 tttcataagttctccaagatagcttatgaaaacag 8017440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 30552637 - 30552705
Alignment:
Q  122 aacttataacatgtccataaattg-tttttagcttatttccataagttctatatgataacttatgaaaa 189  Q
    ||||||| ||||||| |||| ||| ||||||||||||||||||||| ||| || ||||  |||||||||    
T  30552637 aacttatgacatgtcaataagttggtttttagcttatttccataagctctctaggatagtttatgaaaa 30552705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 44438835 - 44438907
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| |||||| |||||  |||||| |||||||||||| ||| |||  | ||||||||||||| ||||||||    
T  44438835 cttatgacatgttcataacctgttttcagcttatttccacaagatctccaggataacttatgaagacagctta 44438907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 41957447 - 41957540
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttagaa-ttagatgaaaacaattt 216  Q
    ||||| |||||||||||| ||||||| | ||||||| ||||||||||  | |||| ||||||||||||||||| || ||| |||||||||||||    
T  41957447 cttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaaacaattt 41957540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 18704030 - 18704104
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||| ||| | | ||| |||||||||||| ||||    
T  18704030 aacttataacatgtctataagttgttttcagcttatttccataagatctttgtaatagcttatgaaaacaactta 18704104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 13194875 - 13194833
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataag 166  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  13194875 cttataacatgtccatatgttgtttttagcttatttccataag 13194833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 19138714 - 19138787
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataagttct--atatgataacttatgaaaacagctta 196  Q
    |||| |||||| ||||||||||||| |||||||||||||||| |||  |||| ||| |||||||||||| ||||    
T  19138714 ttatgacatgtacataaattgttttcagcttatttccataagctctccatataatagcttatgaaaacaactta 19138787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 32172729 - 32172655
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||| ||||||||||||    |||| ||||||||||||| ||||||  |||||| |||||||||||||||||    
T  32172729 aacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatgaaaacagctta 32172655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 1084136 - 1084189
Alignment:
Q  143 ttgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||||||||||||||||||||| |||  ||||||  ||||||||||||||||    
T  1084136 ttgtttttagcttatttccataagctcttcatgatatgttatgaaaacagctta 1084189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 36638799 - 36638750
Alignment:
Q  146 tttttagcttatttccataagttctatatgataacttatgaaaacagctt 195  Q
    |||| |||||||||||||||| ||| || |||||||||||||||||||||    
T  36638799 ttttcagcttatttccataagctctctaggataacttatgaaaacagctt 36638750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 197
Target Start/End: Original strand, 40205070 - 40205143
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttag 197  Q
    ||||||||||||||||||  |||||| |||||||||| ||||| |||  | |||| |||||||||||| |||||    
T  40205070 cttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaacttag 40205143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 13604845 - 13604917
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| |||||||||||  ||||||| | ||||||| |||||| |||  | ||||||||||||||||||||||    
T  13604845 cttatgacatgtccatacgttgttttcaacttattttcataagctcttcaagataacttatgaaaacagctta 13604917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 42582562 - 42582510
Alignment:
Q  132 atgtccataaattgtttttagcttatttccataagttctatatgataacttat 184  Q
    ||||||||||||| |||| | |||||||||||||||||| || ||||||||||    
T  42582562 atgtccataaattattttcaacttatttccataagttctctaagataacttat 42582510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 14182390 - 14182448
Alignment:
Q  137 cataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||||||||| | ||||||| ||||||||||  | ||||||||||||||||||||||    
T  14182390 cataaattgttttcaacttattttcataagttct-caggataacttatgaaaacagctta 14182448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 8481270 - 8481220
Alignment:
Q  146 tttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||||||||||||||||||  ||  | ||||||||||||||||||||||    
T  8481270 tttttagcttatttccataagccctcaaagataacttatgaaaacagctta 8481220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 9202771 - 9202816
Alignment:
Q  151 agcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||||| ||||||||||  | ||||||||||||||||||||||    
T  9202771 agcttattttcataagttcttcaagataacttatgaaaacagctta 9202816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 30269727 - 30269764
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttattt 159  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  30269727 aacttataacatgcccataagttgtttttagcttattt 30269764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 39594862 - 39594809
Alignment:
Q  143 ttgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||| ||||||||| ||||||||| | | |||| |||||||||||||||||    
T  39594862 ttgttttcagcttattttcataagttcaacaagatatcttatgaaaacagctta 39594809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 4014440 - 4014492
Alignment:
Q  144 tgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| ||||||||| ||||||||||  | |||| |||||||||||||||||    
T  4014440 tgttttcagcttattttcataagttctccaagatagcttatgaaaacagctta 4014492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 10280602 - 10280662
Alignment:
Q  132 atgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    |||||||||| ||||| | |||||||||||||||||||| |  ||||||||| | ||||||    
T  10280602 atgtccataagttgttatcagcttatttccataagttctctgagataacttaagcaaacag 10280662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 16863854 - 16863782
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||||||||| | ||| ||||||| ||||||||| || |||||    ||||||||| ||||||||||||||    
T  16863854 cttataacatgttcttaagttgttttcagcttattttcacaagttaaccatgataactgatgaaaacagctta 16863782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 35963309 - 35963273
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataag 166  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  35963309 acatgtccataagttgttttcagcttatttccataag 35963273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 37273210 - 37273140
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    ||||||| |||||||||||| ||||||| | ||||||||||||||||||  | |||| |||||||||||||    
T  37273210 aacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaacag 37273140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 237464 - 237399
Alignment:
Q  131 catgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||||||||  |||||| ||||||||||| |||| |||||| ||||||||||||||||| ||||    
T  237464 catgtccataagctgttttcagcttatttccgtaagctctataggataacttatgaaaacaactta 237399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 1217796 - 1217889
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttagaa-ttagatgaaaacaattt 216  Q
    ||||| |||||||||||| ||||||| | |||| || ||||||||||  | |||| ||||||||||||||||| || ||| |||||||||||||    
T  1217796 cttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaaacaattt 1217889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 39602206 - 39602278
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| |||||| ||||||||||||| | ||||||| ||||||||||  | |||| |||||||||||||||||    
T  39602206 cttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagctta 39602278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 48286812 - 48286899
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttagaa-ttagatgaaaacaattt 216  Q
    |||||||||||||  ||| | |||||||||| ||||| |||| |||||||||||||||||||| ||| || ||| ||| |||||||||    
T  48286812 acatgtccataaaccgttatcagcttatttctataagctctacatgataacttatgaaaacagtttataacttatatggaaacaattt 48286899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 43115132 - 43115058
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||| |||  ||||||  | ||||||||| ||||    
T  43115132 aacttatgacatgtccataacttgttttcagcttatttccataagctctcaatgatagttcatgaaaacaactta 43115058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 31010478 - 31010405
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctt 195  Q
    ||||||| ||||||||||||  |||||| |||||| ||||||||| ||| |||||||  ||| |||||||||||    
T  31010478 aacttatgacatgtccataagctgttttcagcttaattccataagctctctatgataggttacgaaaacagctt 31010405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 43397901 - 43397836
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaa 189  Q
    |||||||||||||||||||||||||| | |||| ||||||||| |||    |||||||||||||||    
T  43397901 cttataacatgtccataaattgttttcaacttacttccataagctctccgcgataacttatgaaaa 43397836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 54180776 - 54180844
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    ||||| |||||||||||| |||||||||||||||||  ||||| |||  || ||| |||||||||||||    
T  54180776 cttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaaacag 54180844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 2128255 - 2128326
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||||||| |||||  |||||| ||||||||| |||| |||||| | |||  |||||||||||||||||    
T  2128255 ttataacatgttcataagctgttttcagcttattttcatacgttctaaaagatggcttatgaaaacagctta 2128326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 24785279 - 24785212
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||| |||||| ||||| ||||||||||||||||| |||||| |||  | |||| ||||||||||||    
T  24785279 cttatgacatgttcataagttgtttttagcttatttacataagctctcgaggatagcttatgaaaaca 24785212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 21862175 - 21862213
Alignment:
Q  128 taacatgtccataaattgtttttagcttatttccataag 166  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  21862175 taacatgtccataagttgttttcagcttatttccataag 21862213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 36200172 - 36200110
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttat 184  Q
    ||||||| |||||||||||| ||||||| ||||||||||||| || |||| | |||| |||||    
T  36200172 aacttatgacatgtccataagttgttttcagcttatttccatgagctctacaggatagcttat 36200110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 45432936 - 45433002
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    |||| |||||| ||||| ||||||| |||||||||||||||| |||| | ||| |||| ||||||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagctctacaggatgacttgtgaaaaca 45433002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 12985352 - 12985409
Alignment:
Q  135 tccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    ||||||| |||||||  |||||||||||||||||||  | |||| |||||||||||||    
T  12985352 tccataagttgttttcggcttatttccataagttcttgaggatagcttatgaaaacag 12985409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 41644461 - 41644513
Alignment:
Q  144 tgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| ||||||||||| |||| ||| || |||| |||||||||||||||||    
T  41644461 tgttttcagcttatttccttaagatctctacgatagcttatgaaaacagctta 41644513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 44488936 - 44488892
Alignment:
Q  145 gtttttagcttatttccataagttctatatgataacttatgaaaa 189  Q
    ||||| |||||||||||||||||||| || |||| ||||||||||    
T  44488936 gttttcagcttatttccataagttctctaagatagcttatgaaaa 44488892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 1408277 - 1408324
Alignment:
Q  138 ataaattgtttttagcttatttccataagttctatatgataacttatg 185  Q
    |||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  1408277 ataacttgttttcagcttatttccataagctctatatgataacttatg 1408324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 281842 - 281916
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||| ||||||| |||| ||||||| ||||||||||||| || ||| || |||| |||||||| ||||||||    
T  281842 aacttatgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttatgaacacagctta 281916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 1019604 - 1019646
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccata 164  Q
    ||||||||||||||| |||| ||||||||||||||||||||||    
T  1019604 aacttataacatgtctataagttgtttttagcttatttccata 1019646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 14492374 - 14492304
Alignment:
Q  126 tataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||||| | ||||||||||||| |||| ||||||| ||  ||| || ||||||||||||||||||||||    
T  14492374 tataacatattcataaattgttttcagctgatttccacaaactctctaggataacttatgaaaacagctta 14492304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 2117470 - 2117405
Alignment:
Q  131 catgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| ||||  ||||||||||||||||| ||||| ||| || ||||||||||||||||| ||||    
T  2117470 catgtctataagctgtttttagcttatttcaataagctctctaggataacttatgaaaacaactta 2117405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 34939818 - 34939777
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataa 165  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  34939818 cttatgacatgtccataaattgttttcagcttatttccataa 34939777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26559160 - 26559215
Alignment:
Q  1 tttggattgacttatttgagcttacgtactggtatgagcatttgtgatactgtttg 56  Q
    |||||||| ||||||||||| |||| |||||| || ||||||||||| ||||||||    
T  26559160 tttggattaacttatttgagtttacctactggcataagcatttgtgagactgtttg 26559215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 32386559 - 32386626
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||||||||||||| || ||||||| ||||||||| |||||| |||  | ||||||| |||||||||    
T  32386559 cttataacatgtccacaacttgttttcagcttattttcataagctctccaggataactaatgaaaaca 32386626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 33787761 - 33787836
Alignment:
Q  144 tgtttttagcttatttccataagttctatatgataacttatgaaaacagcttagaa-ttagatgaaaacaatttga 218  Q
    |||||| ||| |||||||||||| |||  | |||||||||||||||||||||| || ||| |||||| ||||||||    
T  33787761 tgttttcagcctatttccataagctctccaagataacttatgaaaacagcttataacttatatgaaatcaatttga 33787836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 738674 - 738748
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||| || |||||||||| |||||||||||||||||   ||||| |  | |||||||||||||| |||||||    
T  738674 aacttatgacgtgtccataaactgtttttagcttatttctgcaagttttgcaagataacttatgaaatcagctta 738748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 4324447 - 4324517
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    ||||||| |||||||| |||| || ||||||||||||| |||||||| |  | |||| |||||||||||||    
T  4324447 aacttatgacatgtccctaaactgcttttagcttatttgcataagttttccaggatagcttatgaaaacag 4324517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 30524010 - 30523948
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaa 187  Q
    |||| |||||||||| | ||| |||||||||||||||||||| ||| || |||| ||||||||    
T  30524010 ttatgacatgtccattagttgcttttagcttatttccataagctctttaggatagcttatgaa 30523948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 1275224 - 1275151
Alignment:
Q  124 cttataacatgtccataaattgttttt-agcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| |||||||| ||  |||||||| |||||||||||||||| |||  | |||||| |||||||||||||||    
T  1275224 cttatgacatgtccttacgttgtttttcagcttatttccataagctctccaggataacatatgaaaacagctta 1275151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 9732551 - 9732478
Alignment:
Q  123 acttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||||||||||||||||| |||||| |||||| ||| ||||  |||  | |||||||| |||||||| ||||    
T  9732551 acttataacatgtccataaactgttttcagcttacttctataaactctcaaggataacttgtgaaaacaactta 9732478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 10017550 - 10017505
Alignment:
Q  144 tgtttttagcttatttccataagttctatatgataacttatgaaaa 189  Q
    |||||||||||||||| ||||| ||||| |||||||| ||||||||    
T  10017550 tgtttttagcttattttcataaattctacatgataacatatgaaaa 10017505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 6537023 - 6536979
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataag 166  Q
    ||||||| |||||| ||||| ||||||| ||||||||||||||||    
T  6537023 aacttatgacatgttcataagttgttttcagcttatttccataag 6536979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 7931804 - 7931852
Alignment:
Q  143 ttgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||||| |||||||||||||||| |||||| |||| ||| ||||||||    
T  7931804 ttgttttcagcttatttccataagctctataggatagcttgtgaaaaca 7931852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 9027654 - 9027610
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataag 166  Q
    ||||||| |||||||||||| ||||||| ||||||||| ||||||    
T  9027654 aacttatgacatgtccataagttgttttcagcttattttcataag 9027610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 27909640 - 27909676
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataag 166  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  27909640 acatgtccataagttgttttcagcttatttccataag 27909676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 32376898 - 32376926
Alignment:
Q  134 gtccataaattgtttttagcttatttcca 162  Q
    |||||||||||||||||||||||||||||    
T  32376898 gtccataaattgtttttagcttatttcca 32376926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 32386102 - 32386174
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||| ||||||||||||| ||||||| |||||| || |||||| | |  | ||||||| ||||||||||||||    
T  32386102 cttacaacatgtccataagttgttttcagcttactttcataagctttccaggataactaatgaaaacagctta 32386174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 33500477 - 33500549
Alignment:
Q  125 ttataacatgtccataaattgtttttag-cttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||| |||||| ||||| |||||||| | ||||||||||||||||||| |||||| |||  | ||||||||||    
T  33500477 ttatgacatgtgcataagttgtttttcgacttatttccataagttctacatgatagcttgcggaaacagctta 33500549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 30277247 - 30277313
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| |||||| ||||||| |||||||||||||||  ||| || |||| |||||||||||||||||    
T  30277247 acatggccataagttgttttcagcttatttccataaactctctaggatagcttatgaaaacagctta 30277313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 2235653 - 2235722
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagct 194  Q
    |||| |||||| ||||| | |||||||||| ||||||||||| ||| || |||| |||||||||||||||    
T  2235653 ttatgacatgttcataagtcgtttttagctcatttccataagctctttaagataccttatgaaaacagct 2235722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 2493014 - 2492969
Alignment:
Q  120 aaaacttataacatgtccataaattgtttttagcttatttccataa 165  Q
    |||||||||||||||| ||||| |||||||| ||||||||||||||    
T  2493014 aaaacttataacatgttcataagttgttttttgcttatttccataa 2492969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 4055610 - 4055679
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||||| ||||||||||||| |||||| ||||||||||| |||| ||| |  |||| ||||||||||||    
T  4055610 aacttatgacatgtccataaactgttttcagcttatttccttaagctctctgagatagcttatgaaaaca 4055679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 11795166 - 11795077
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttagaa-ttagatgaaaaca 212  Q
    ||||| ||||||||||||  |||||| |||||||||||||||| |||  || ||| ||||||||| ||||||| || ||| |||||||||    
T  11795166 cttatgacatgtccataacctgttttcagcttatttccataagctctccataatagcttatgaaatcagcttataacttatatgaaaaca 11795077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 4558863 - 4558800
Alignment:
Q  133 tgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||| |||| |||||||||| ||||||||||||| ||| || |||| |||||| ||||||||||    
T  4558863 tgtctataagttgtttttagtttatttccataagctctctaggatagcttatggaaacagctta 4558800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 8062394 - 8062331
Alignment:
Q  133 tgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||||||  |||||| |||||||||||||||  ||| || |||| |||||||||||||||||    
T  8062394 tgtccataagatgttttcagcttatttccataatctctctaagatagcttatgaaaacagctta 8062331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 25869260 - 25869303
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataa 165  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||    
T  25869260 aacttatgacatgtccataagttgttttcagcttatttccataa 25869303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 30013283 - 30013220
Alignment:
Q  133 tgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| |||| | |||| ||||||||||||| ||||||| | |||| |||||||||||||||||    
T  30013283 tgtccctaaactattttcagcttatttccattagttctacaggatagcttatgaaaacagctta 30013220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 30389167 - 30389104
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagc 193  Q
    |||||| ||||| ||||||| ||||||||| |||||||||| || || | ||||||||||||||    
T  30389167 acatgttcataagttgttttcagcttattttcataagttctctaggaaagcttatgaaaacagc 30389104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 3536876 - 3536987
Alignment:
Q  62 cttatttgagcttatttactagcataagtatttttgcgattatttgggagaatttaccaaaac---ttataacat-gtccataaattgtttttagcttat 157  Q
    ||||||||||||||| |||| |||||||  ||| || || |||| | ||||||||||  ||||   |||| |||| || ||||||||||||| |||||||    
T  3536876 cttatttgagcttatctactggcataagc-tttgtgtgactattcgagagaatttacagaaacagcttatgacattgttcataaattgttttcagcttat 3536974  T
Q  158 ttccataagttct 170  Q
    |||||||||||||    
T  3536975 ttccataagttct 3536987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 38874723 - 38874625
Alignment:
Q  121 aaacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttaga-attagatgaaaacaatttga 218  Q
    |||| ||||||| ||||||||  | |||||||||||||| |||| |||||  |  ||| |||||||||||||||||||  ||| ||||||| |||||||    
T  38874723 aaacatataacacgtccataagctatttttagcttattttcatatgttctccaaaatagcttatgaaaacagcttagagcttatatgaaaagaatttga 38874625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 9573006 - 9572911
Alignment:
Q  65 atttgagcttatttactagcataagtatttttgcgattatttgggagaatttaccaaaa---cttataacatgtccataaattgtttttagcttat 157  Q
    ||||||||| || |||| ||||||| ||||||| || | |||| ||||| |||| ||||   ||||| |||||||||||| ||||||||| |||||    
T  9573006 atttgagctcatctacttgcataagaatttttgagactgtttgtgagaacttacgaaaataacttatgacatgtccataagttgtttttaccttat 9572911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 26284793 - 26284858
Alignment:
Q  126 tataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||||||||| |||| ||||||| ||||||||| |||||| | || | ||||||||| |||||||    
T  26284793 tataacatgtctataagttgttttcagcttattttcataagctatacaggataacttacgaaaaca 26284858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 6950390 - 6950338
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttctatatgataactt 182  Q
    ||||||| |||| ||||||| |||||||||||||||| ||| || ||||||||    
T  6950390 acatgtcgataagttgttttcagcttatttccataagctctttaggataactt 6950338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 11569453 - 11569525
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||| |||||| ||||| ||||||| ||||||||| || ||  |||  |||||| |||||||||||||||||    
T  11569453 cttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagctta 11569525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 13000418 - 13000462
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataag 166  Q
    ||||||| ||||||||| || ||||||| ||||||||||||||||    
T  13000418 aacttatgacatgtccacaagttgttttcagcttatttccataag 13000462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 14247240 - 14247292
Alignment:
Q  144 tgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| ||||||||| |||||||||| || |||| |||| ||||||||||||    
T  14247240 tgttttcagcttattttcataagttctctacgatatcttacgaaaacagctta 14247292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14926903 - 14926959
Alignment:
Q  1 tttggattgacttatttgagcttacgtactggtatgagcatttgtgatactgtttga 57  Q
    ||||||||||||||||||| ||||  |||||| || |||| |||||| |||||||||    
T  14926903 tttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttga 14926959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 28769343 - 28769407
Alignment:
Q  132 atgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||||||| ||||||| |||||||||||||||  |||  |  ||| |||||||||||||||||    
T  28769343 atgtccataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagctta 28769407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 31862547 - 31862495
Alignment:
Q  144 tgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| ||||||||| |||||| ||| || ||||||||||||||||| ||||    
T  31862547 tgttttcagcttattttcataagctctctaggataacttatgaaaacatctta 31862495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 43704370 - 43704414
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataag 166  Q
    ||||||| |||||| |||||| |||||| ||||||||||||||||    
T  43704370 aacttatgacatgttcataaactgttttaagcttatttccataag 43704414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 44401629 - 44401589
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttct 170  Q
    |||||| |||| |||||||| ||||||||||||||||||||    
T  44401629 acatgttcatacattgttttcagcttatttccataagttct 44401589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 7694012 - 7694078
Alignment:
Q  130 acatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    |||||| ||||| ||||||| |||||||||||||||  |||  | ||||||||||||||||||||||    
T  7694012 acatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagctta 7694078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 11264377 - 11264303
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||| ||||||||||||| |||||| | |||||||||||||| ||| || |||  |||||||||||| ||||    
T  11264377 aacttatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaactta 11264303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 26747420 - 26747470
Alignment:
Q  146 tttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||| ||||    
T  26747420 tttttagcttatttccataagttctttaggataactaatgaaaacaactta 26747470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 35064915 - 35064860
Alignment:
Q  138 ataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagc 193  Q
    |||||||||||| |||||||||||||||  |||  |||||| ||||||||||||||    
T  35064915 ataaattgttttcagcttatttccataaactctccatgatatcttatgaaaacagc 35064860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 43824350 - 43824255
Alignment:
Q  131 catgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagcttagaa-ttagatgaaaacaatttgagtttaat 225  Q
    ||||| ||||| ||||||| |||||||||||||||| | |  | ||||||||| ||||| |||||| || ||| ||||||| ||||||| ||||||    
T  43824350 catgttcataagttgttttcagcttatttccataagctttccaggataacttacgaaaaaagcttataacttatatgaaaagaatttgattttaat 43824255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 55547038 - 55547081
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataa 165  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||    
T  55547038 aacttatgacatgtctataagttgtttttagcttatttccataa 55547081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 21953024 - 21952962
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttat 184  Q
    ||||||| ||||||||||||  ||||||||| |||||||| |||| |||||| |||| |||||    
T  21953024 aacttatgacatgtccataacctgtttttagtttatttccttaagctctataggatagcttat 21952962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Original strand, 50800024 - 50800097
Alignment:
Q  122 aacttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||| ||||||| ||||  |||||| |||||||||||| |||||||  |||||| |||| ||||||||||||    
T  50800024 aacttatgacatgtctataagctgttttcagcttatttcca-aagttctccatgatagcttaagaaaacagctta 50800097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 18628558 - 18628607
Alignment:
Q  143 ttgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    ||||||| |||||||||||||||| |||  | ||||||||||||||||||    
T  18628558 ttgttttcagcttatttccataagctctccaagataacttatgaaaacag 18628607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 31006072 - 31006023
Alignment:
Q  144 tgtttttagcttatttccataagttctatatgataacttatgaaaacagc 193  Q
    |||||| ||||||||||| |||||| | ||||||| ||||||||||||||    
T  31006072 tgttttcagcttatttccgtaagttatctatgatagcttatgaaaacagc 31006023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 34430628 - 34430657
Alignment:
Q  61 acttatttgagcttatttactagcataagt 90  Q
    ||||||||||||||||||||||||||||||    
T  34430628 acttatttgagcttatttactagcataagt 34430657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 8469015 - 8468955
Alignment:
Q  131 catgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaaca 191  Q
    ||||||||||| ||||||| || |||||| |||||| ||| ||  ||||||||||||||||    
T  8469015 catgtccataagttgttttcagattattttcataagctctctagaataacttatgaaaaca 8468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 8469374 - 8469438
Alignment:
Q  125 ttataacatgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaa 189  Q
    |||| |||||| ||||| ||||||| |||||||||||||| ||||| ||   |||||||||||||    
T  8469374 ttatgacatgttcataagttgttttcagcttatttccataggttctctagactaacttatgaaaa 8469438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 11158365 - 11158425
Alignment:
Q  136 ccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacagctta 196  Q
    ||||||| |||||| |||||||||||| ||| ||| || |||| |||||||||||| ||||    
T  11158365 ccataaactgttttcagcttatttccacaagctctctaagatagcttatgaaaacaactta 11158425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 53673662 - 53673722
Alignment:
Q  132 atgtccataaattgtttttagcttatttccataagttctatatgataacttatgaaaacag 192  Q
    |||||||||| ||||||| ||||||||| |||||| |||  | |||| |||||||||||||    
T  53673662 atgtccataagttgttttcagcttatttacataagctctccaagatagcttatgaaaacag 53673722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 27075 - 27021
Alignment:
Q  124 cttataacatgtccataaattgtttttagcttatttccataagttctatatgata 178  Q
    ||||| |||||| |||||| |||||| |||||||||||||||| ||| |||||||    
T  27075 cttatgacatgtgcataaactgttttcagcttatttccataagctctctatgata 27021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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