View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16143_high_3 (Length: 612)

Name: NF16143_high_3
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16143_high_3
NF16143_high_3
[»] chr1 (2 HSPs)
chr1 (19-142)||(47518484-47518607)
chr1 (546-601)||(47518419-47518474)
[»] chr7 (3 HSPs)
chr7 (144-221)||(11831175-11831252)
chr7 (144-205)||(37130523-37130584)
chr7 (144-192)||(11831134-11831182)
[»] chr2 (3 HSPs)
chr2 (135-247)||(41318923-41319035)
chr2 (144-238)||(6128498-6128592)
chr2 (146-260)||(6127853-6127967)
[»] chr4 (1 HSPs)
chr4 (172-247)||(44524092-44524167)
[»] chr8 (6 HSPs)
chr8 (144-235)||(7495614-7495705)
chr8 (212-269)||(19143718-19143775)
chr8 (212-269)||(19108744-19108801)
chr8 (144-205)||(19143602-19143663)
chr8 (202-269)||(19143315-19143382)
chr8 (156-205)||(19108633-19108682)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 47518607 - 47518484
Alignment:
Q  19 tgtgtcacattagtggattgttttctaattattagtttgaatacattacatttgttacaggggaggaacctggatacaaccattatttgggtctaaataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  47518607 tgtgtcacattagtggattgttttctaattattagtttgaatacattacatttgttacatgggaggaacctggatacaaccattatttaggtctaaataa 47518508  T
Q  119 gttgtaatattgttcacttataac 142  Q
    ||||||||||||||||||| ||||    
T  47518507 gttgtaatattgttcacttctaac 47518484  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 546 - 601
Target Start/End: Complemental strand, 47518474 - 47518419
Alignment:
Q  546 ataactcacttttgttccaaaataagttacagctcgcttcttgatttatagatatt 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47518474 ataactcacttttgttccaaaataagttacagctcgcttcttgatttatagatatt 47518419  T

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Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 11831252 - 11831175
Alignment:
Q  144 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtct 221  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11831252 gtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaatcaaacaaactattggaaagtaatttgtct 11831175  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 37130523 - 37130584
Alignment:
Q  144 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccatt 205  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  37130523 gtaaagaataatgaaaactcaactattaatgaatcaaatcaagacaaatcaaaaaaaccatt 37130584  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 11831134 - 11831182
Alignment:
Q  144 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaat 192  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11831134 gtaaagaataatgaagactcaactattaatgaatcaaatcaagacaaat 11831182  T

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Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 41318923 - 41319035
Alignment:
Q  135 cttataacagtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgcct 234  Q
    ||||| || ||||||||||||||||| ||  |  ||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||||| |||||    
T  41318923 cttattactgtaaagaataatgaagattcctctcttaatgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgcaatgcct 41319022  T
Q  235 taatacatggagt 247  Q
    |||||||||||||    
T  41319023 taatacatggagt 41319035  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 6128592 - 6128498
Alignment:
Q  144 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgccttaat 238  Q
    ||||||||| | ||||| ||| ||| ||||| ||||||||||||||| |||||||||||||||||||  ||||| |||||||||||| |||||||    
T  6128592 gtaaagaatcaagaagattcatcaagtaatggatcaaatcaagacaagtcaaacaaaccattggaaaacaatttatctgaatgcattaccttaat 6128498  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 6127853 - 6127967
Alignment:
Q  146 aaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgccttaatacatgga 245  Q
    ||||||| | ||||| ||| ||| ||||| ||||||| ||||||| ||||||||||||||| |||  ||||| |||||| ||||||||||||| ||||||    
T  6127853 aaagaatcaagaagattcatcaagtaatggatcaaattaagacaagtcaaacaaaccattgaaaaacaatttatctgaacgcattgccttaattcatgga 6127952  T
Q  246 gtaaagacaaataat 260  Q
     ||||  ||||||||    
T  6127953 ataaaatcaaataat 6127967  T

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Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 44524167 - 44524092
Alignment:
Q  172 atgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgccttaatacatggagt 247  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||||    
T  44524167 atgaatcaaatcaagagaaatcaaacaaaccattggaaaggaatatgtgtgaatgtaatgccttaatacatggagt 44524092  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 7495705 - 7495614
Alignment:
Q  144 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccattggaaagtaatttgtctgaatgcattgcctt 235  Q
    ||||||||| ||||||| ||  |||| |||  ||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7495705 gtaaagaatcatgaagattcctcaatcaatagatcaaatgaaaacaaatcaaacaaaccattagaaaataatttgtctgaatgcattgcctt 7495614  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 19143718 - 19143775
Alignment:
Q  212 taatttgtctgaatgcattgccttaatacatggagtaaagacaaataatattcataaa 269  Q
    |||||| ||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  19143718 taatttatctgaatgcattgccttaatacatggaataaaatcaaataatattcataaa 19143775  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 19108744 - 19108801
Alignment:
Q  212 taatttgtctgaatgcattgccttaatacatggagtaaagacaaataatattcataaa 269  Q
    |||||| ||| ||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  19108744 taatttatctaaatgcattgccttaatacatggaataaaatcaaataatactcataaa 19108801  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 19143602 - 19143663
Alignment:
Q  144 gtaaagaataatgaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccatt 205  Q
    ||||||||| | ||||| ||| ||| |||||| |||||||||||||| ||||||||||||||    
T  19143602 gtaaagaatcaagaagattcatcaagtaatgattcaaatcaagacaagtcaaacaaaccatt 19143663  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 19143315 - 19143382
Alignment:
Q  202 cattggaaagtaatttgtctgaatgcattgccttaatacatggagtaaagacaaataatattcataaa 269  Q
    |||| |||| |||||| |||||||| ||||| |||||||||||| ||||  |||||||||| ||||||    
T  19143315 cattagaaaataatttatctgaatgtattgcattaatacatggaataaaatcaaataatatccataaa 19143382  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 19108633 - 19108682
Alignment:
Q  156 gaagactcaacaattaatgaatcaaatcaagacaaatcaaacaaaccatt 205  Q
    ||||| ||| ||| ||||| ||||||||||||||| ||||||||||||||    
T  19108633 gaagattcatcaagtaatggatcaaatcaagacaagtcaaacaaaccatt 19108682  T

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