View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16143_low_1 (Length: 779)

Name: NF16143_low_1
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16143_low_1
NF16143_low_1
[»] chr1 (4 HSPs)
chr1 (1-772)||(47799645-47800415)
chr1 (607-697)||(48755583-48755673)
chr1 (450-595)||(11326829-11326975)
chr1 (450-595)||(11484850-11484996)
[»] chr7 (3 HSPs)
chr7 (14-209)||(1528249-1528444)
chr7 (122-190)||(20276780-20276848)
chr7 (40-134)||(4683126-4683220)
[»] chr2 (5 HSPs)
chr2 (11-134)||(31481859-31481982)
chr2 (134-291)||(31481678-31481837)
chr2 (40-134)||(31332149-31332243)
chr2 (40-134)||(31338879-31338973)
chr2 (63-134)||(30268986-30269057)
[»] chr6 (3 HSPs)
chr6 (497-568)||(28730916-28730988)
chr6 (497-568)||(28735607-28735679)
chr6 (63-134)||(30824885-30824956)
[»] chr3 (1 HSPs)
chr3 (40-134)||(7404127-7404221)
[»] chr8 (3 HSPs)
chr8 (40-134)||(25640939-25641033)
chr8 (40-134)||(27813789-27813882)
chr8 (126-254)||(4742895-4743023)
[»] chr4 (1 HSPs)
chr4 (63-134)||(53302312-53302383)


Alignment Details
Target: chr1 (Bit Score: 720; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 1 - 772
Target Start/End: Original strand, 47799645 - 47800415
Alignment:
Q  1 tgtgatcgtcctgcacctttgcttgttaaaggtctttgaattctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttctagattca 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799645 tgtgatcgtcctgaacctttgcttgttaaaggtctttgaattctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttctagattca 47799744  T
Q  101 aacttaactaaattattggaaacttagggttgaatggtgcagaagccggtcacgttcctgttgtgcataaccaaactacggctgctccagcaccgacaat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799745 aacttaactaaattattgaaaacttagggttgaatggtgcagaagccagtcacgttcctgttgtgcataaccaaactacggctgctccagcaccgacaat 47799844  T
Q  201 ggtgcctgtcggagaggagaggacgcatgtgtacaccggtcggaggctgattttattgtggtgccattgcacttgaaggcaactatattggttatagata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799845 ggtgcctgtcggagaggagaggacgcatgtgtacaccggtcggaggctgattttattgtggtgccattgcacttgaaggcaactatattggttatagata 47799944  T
Q  301 aagttaaatgaggtgagccataannnnnnnnctagtgcaagtagttatgcattttacattttgaagtatatgatgcacttctaatattactactgctgta 400  Q
    ||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47799945 aagttaaatgaggtgagccatatttttttttctagtgcaagtagttatgcattttacattttgaagtatatgatgcacttctaatattactactgctgta 47800044  T
Q  401 ggctcaaaaattcagtgcaaattcaactcactcatcaaacaaaattctaatggtttgttgtgttttctatttcggttggttttgatatttcattgtctat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800045 ggctcaaaaattcagtgcaaattcaactcactcatcaaacaaaattctaatggtttgttgtgttttctatttcggttggttttgatatttcattgtctat 47800144  T
Q  501 tattcctcgtgcctttacaaaatgcaatctaagacaagcaataatttacctaagttaaggacttttcttacacgaatcagaggtatagagatgattgtgt 600  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800145 tattcctcgtgccttt-caaaatgcaatctaagacaagcaataatttacctaagttaaggacttttcttacacgaatcagaggtatagagatgattgtgt 47800243  T
Q  601 agtggatggaatcaagagataacgatatgaatgtctgaaggttatctgtttgcaggtctgaatctatttgtttatttgataaaattcaaaggttaaccgc 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47800244 agtggatggaatcaagagataacgatatgaatgtctgaaggttatctgtttgcaggtctgaatctatttgtttatttgataaaattcaaaggttaaccgc 47800343  T
Q  701 cgagaaggagttaactatatgttatcatagttatgagcgacaaccttgaaacaactgtatatgatgatgtcc 772  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47800344 cgagaaggagttaactatatgttatcatagttatgagcgacagccttgaaacaactgtatatgatgatgtcc 47800415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 697
Target Start/End: Original strand, 48755583 - 48755673
Alignment:
Q  607 tggaatcaagagataacgatatgaatgtctgaaggttatctgtttgcaggtctgaatctatttgtttatttgataaaattcaaaggttaac 697  Q
    |||||||||||||||| | || ||| |||||||  |||||| |||||||||||||| ||||||  || ||||||||||| |||| ||||||    
T  48755583 tggaatcaagagataaaggtaggaaggtctgaatcttatctatttgcaggtctgaaactatttacttgtttgataaaatgcaaaagttaac 48755673  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 595
Target Start/End: Complemental strand, 11326975 - 11326829
Alignment:
Q  450 atggtttgttgtgttttctatttcggttggttttgatatttcattgtctattattcctcgtgcctttacaaaatgcaatctaagacaagcaataatttac 549  Q
    ||||||| |||||||||||||||  |||| | ||  ||||| | || |||| |||||||   |||| || | ||||||||||||| || |||| ||| ||    
T  11326975 atggtttattgtgttttctatttgagttgctctttgtatttaaatggctatgattcctcaaaccttcacgatatgcaatctaagagaatcaatgattaac 11326876  T
Q  550 ctaagttaa-ggacttttcttacacgaatcagaggtatagagatgat 595  Q
    ||||| ||| |||| |||||  || |||||||||||||||| |||||    
T  11326875 ctaaggtaaaggacatttctctcatgaatcagaggtatagatatgat 11326829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 450 - 595
Target Start/End: Complemental strand, 11484996 - 11484850
Alignment:
Q  450 atggtttgttgtgttttctatttcggttggttttgatatttcattgtctattattcctcgtgcctttacaaaatgcaatctaagacaagcaataatttac 549  Q
    ||||||| |||||||||||||||  |||| | ||  ||||| | || |||| |||||||   |||| || | ||||||||||||| || |||| ||| ||    
T  11484996 atggtttattgtgttttctatttgagttgctctttgtatttaaatggctatgattcctcaaaccttcacgatatgcaatctaagagaatcaatgattaac 11484897  T
Q  550 ctaagttaa-ggacttttcttacacgaatcagaggtatagagatgat 595  Q
    ||||| ||| |||| |||||  || |||||||||||||||| |||||    
T  11484896 ctaaggtaaaggacatttctctcatgaatcagaggtatagatatgat 11484850  T

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Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 1528249 - 1528444
Alignment:
Q  14 cacctttgcttgttaaaggtctttgaattctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttctagattcaaacttaactaaat 113  Q
    |||||||||| ||| || || |||| ||| ||||||||||||| || | ||||||| |||||| ||||| || ||||| |||||||   |||||||||||    
T  1528249 cacctttgctcgttgaaagtgtttggattatgcaaaacgaatataattgtttgttcagaatgcaattatgtgtaatttatagattcggtcttaactaaat 1528348  T
Q  114 tattggaaacttagggttgaatggtgcagaagccggtcacgttcctgttgtgcataaccaaactacggctgctccagcaccgacaatggtgcctgt 209  Q
    | || ||||||||||||||||||||| |||||||  | ||||||||||||| ||||| |||| ||| |||||||||||||||||||||||| ||||    
T  1528349 tgttagaaacttagggttgaatggtgtagaagccttttacgttcctgttgttcataatcaaaatactgctgctccagcaccgacaatggtggctgt 1528444  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 20276780 - 20276848
Alignment:
Q  122 acttagggttgaatggtgcagaagccggtcacgttcctgttgtgcataaccaaactacggctgctccag 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  20276780 acttagggttgaatggtgcagaagccggtcacgttcctgttttgcatgaccaaactactgctgctccag 20276848  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 4683126 - 4683220
Alignment:
Q  40 attctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttctagattcaaacttaactaaattattggaaacttagggttgaa 134  Q
    ||||||||||| ||| |||| | ||| |||||||||||||||| || || || ||||||| | |||||||||| | ||||||||||||| |||||    
T  4683126 attctgcaaaatgaacagaattgtttcttcggaatgcgattatgtgtaaattttagattcgatcttaactaaaatgttggaaacttaggattgaa 4683220  T

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Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 31481982 - 31481859
Alignment:
Q  11 ctgcacctttgcttgttaaaggtctttgaattctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttctagattcaaacttaacta 110  Q
    |||| ||| ||||||||||| |  |||| |||||||||||||||| | | | |||||| ||||||||||||| || || |||||||||| | ||||||||    
T  31481982 ctgcccctatgcttgttaaatgcatttggattctgcaaaacgaatggcattgtttgtttggaatgcgattatctgaaaattctagattcgatcttaacta 31481883  T
Q  111 aattattggaaacttagggttgaa 134  Q
    |||| |||||||||||||||||||    
T  31481882 aattgttggaaacttagggttgaa 31481859  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 134 - 291
Target Start/End: Complemental strand, 31481837 - 31481678
Alignment:
Q  134 atggtgcagaagccggtcacgttcctgttgtgcataaccaaactacggctgctccagcaccgacaatggtgcctgtcggagaggagaggacgcatgtgta 233  Q
    ||||| ||||||||| ||| |||||  |  |||| ||||||| ||  ||||||||||  ||| || ||||| || |||||||||||||||||  ||||||    
T  31481837 atggtacagaagccgatcaggttcccatcatgcagaaccaaaatattgctgctccagtgccggcagtggtggctctcggagaggagaggacgattgtgta 31481738  T
Q  234 caccggtcggaggctgattttat--tgtggtgccattgcacttgaaggcaactatattgg 291  Q
    ||  ||||||||||||||||| |  |||||||||| |||| ||| |||||| ||||||||    
T  31481737 cattggtcggaggctgattttgttatgtggtgccactgcagttgtaggcaattatattgg 31481678  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 31332149 - 31332243
Alignment:
Q  40 attctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttctagattcaaacttaactaaattattggaaacttagggttgaa 134  Q
    ||||||||||| ||| |||| | |||||||||||||||||||| || || || ||||||| | |||||||||| | ||||||||||||| |||||    
T  31332149 attctgcaaaatgaacagaattgtttgttcggaatgcgattatgtgtaaattttagattcgatcttaactaaaatgttggaaacttaggattgaa 31332243  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 31338879 - 31338973
Alignment:
Q  40 attctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttctagattcaaacttaactaaattattggaaacttagggttgaa 134  Q
    ||||||||||| ||| |||| | |||||||||||||||||||| || || || ||||||| | |||||||||| | ||||||||||||| |||||    
T  31338879 attctgcaaaatgaacagaattgtttgttcggaatgcgattatgtgtaaattttagattcgatcttaactaaaatgttggaaacttaggattgaa 31338973  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 30269057 - 30268986
Alignment:
Q  63 tttgttcggaatgcgattatatgcaatttctagattcaaacttaactaaattattggaaacttagggttgaa 134  Q
    ||||||||||||||||||||  | || || ||||||| |  ||||||||| | |||||||||||||||||||    
T  30269057 tttgttcggaatgcgattatccgtaaattttagattcgactttaactaaaattttggaaacttagggttgaa 30268986  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 497 - 568
Target Start/End: Original strand, 28730916 - 28730988
Alignment:
Q  497 ctattattcctcgtgcctttacaaaatgcaatctaagac-aagcaataatttacctaagttaaggacttttct 568  Q
    |||| ||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||    
T  28730916 ctatgattcctcatgcctttacaaaatgcaatccaagacaaagcaatgatttacctaagttaaggacatttct 28730988  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 497 - 568
Target Start/End: Original strand, 28735607 - 28735679
Alignment:
Q  497 ctattattcctcgtgcctttacaaaatgcaatctaagac-aagcaataatttacctaagttaaggacttttct 568  Q
    |||| ||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||    
T  28735607 ctatgattcctcatgcctttacaaaatgcaatccaagacaaagcaatgatttacctaagttaaggacatttct 28735679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 30824956 - 30824885
Alignment:
Q  63 tttgttcggaatgcgattatatgcaatttctagattcaaacttaactaaattattggaaacttagggttgaa 134  Q
    |||||||||||||||||||| || || || ||||||| | |||||||||||| |||||||||||||||||||    
T  30824956 tttgttcggaatgcgattatgtgtaaattttagattcgatcttaactaaattgttggaaacttagggttgaa 30824885  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 7404127 - 7404221
Alignment:
Q  40 attctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttctagattcaaacttaactaaattattggaaacttagggttgaa 134  Q
    ||||||||||| ||| |||| | |||||||||||||||||||| || || || ||||||| | |||||||||| | ||||||||||||| |||||    
T  7404127 attctgcaaaatgaacagaattgtttgttcggaatgcgattatgtgtaaattttagattcgatcttaactaaaatgttggaaacttaggattgaa 7404221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 25641033 - 25640939
Alignment:
Q  40 attctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttctagattcaaacttaactaaattattggaaacttagggttgaa 134  Q
    ||||||||||| ||| |||| | |||||||||||||||||||| || || || ||||||  | |||||||||| | ||||||||||||| |||||    
T  25641033 attctgcaaaatgaacagaattgtttgttcggaatgcgattatgtgtaaattttagattagatcttaactaaaatgttggaaacttaggattgaa 25640939  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 27813882 - 27813789
Alignment:
Q  40 attctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttctagattcaaacttaactaaattattggaaacttagggttgaa 134  Q
    |||||||||||||||  ||  | ||||||| |||||||||||| || || || ||||||| | |||||||||||| |||||||||||||||||||    
T  27813882 attctgcaaaacgaacggatttgtttgttcagaatgcgattatgtgtaaatt-tagattcgatcttaactaaattgttggaaacttagggttgaa 27813789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 4743023 - 4742895
Alignment:
Q  126 agggttgaatggtgcagaagccggtcacgttcctgttgtgcataaccaaactacggctgctccagcaccgacaatggtgcctgtcggagaggagaggacg 225  Q
    ||||||| || ||| |||||||  ||| ||||| || ||||| |||||||||   |||||||||||  | ||| ||||| |  | |||||||||||||||    
T  4743023 agggttggatagtgaagaagccaatcatgttcccgtcgtgcagaaccaaactgttgctgctccagcttcaacagtggtggcatttggagaggagaggacg 4742924  T
Q  226 catgtgtacaccggtcggaggctgatttt 254  Q
      ||||||||  |||||||||||||||||    
T  4742923 tctgtgtacattggtcggaggctgatttt 4742895  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 53302383 - 53302312
Alignment:
Q  63 tttgttcggaatgcgattatatgcaatttctagattcaaacttaactaaattattggaaacttagggttgaa 134  Q
    ||||||| |||||||||||| || || || ||||||| | |||||||||| |  ||||||||||||||||||    
T  53302383 tttgttcagaatgcgattatgtgtaaattttagattcgatcttaactaaaattgtggaaacttagggttgaa 53302312  T

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