View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16143_low_10 (Length: 374)
Name: NF16143_low_10
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16143_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 112 - 358
Target Start/End: Complemental strand, 47884195 - 47883949
Alignment:
| Q |
112 |
tatttaagggttgagatttaataaataaagaaattatgtcctcttgttccctcttcctctgtacgcacgaccactttgcccacttcctctcaacgccgcc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47884195 |
tatttaagggttgagatttaataaataaagaaattatgtcctcttgttccctcttcctctgtacgcacgaccactttgcccactttctctcaacgccgcc |
47884096 |
T |
|
| Q |
212 |
gccaccatcaacttccgtccaccaccatcaatcacaactcctatctcttccccttcctcttatttctcccattgttgctgttatttatttttcaaaacaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47884095 |
gccaccatcaacttccgtccaccaccatcaatcacaactcctatctcttccccttcctcttatttctcccattgttgctgttatttatttttcaaaacaa |
47883996 |
T |
|
| Q |
312 |
atgtctggaatttggttacaaaatccatgtcatgtgagaattaaaac |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47883995 |
atgtctggaatttggttacaaaatccatgtcatgagagaattaaaac |
47883949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 47884282 - 47884233
Alignment:
| Q |
40 |
attttaaggtatgaaaggtggtataaatgagtccggttatgctccattta |
89 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
47884282 |
attttaaggtatgaaaggtggtataaattagtccggatatgctccattta |
47884233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 38386758 - 38386818
Alignment:
| Q |
298 |
atttttcaaaacaaatgtctggaatttggttacaaaatccatgtcatgtgagaattaaaac |
358 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
38386758 |
atttttcaaaacaaatgtctggaattttgttccaaaatccatgtcacgtgagaattaaaac |
38386818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University