View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16143_low_11 (Length: 372)
Name: NF16143_low_11
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16143_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 50264245 - 50264599
Alignment:
| Q |
1 |
accatgaaaatacactaacaaaggtagnnnnnnnngtgaagaatttggaacatagaaacgtgcccaaatgtttgtaacactgtcaatgataatgtccctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50264245 |
accatgaaaatacactaacaaaggtagttttttttgtggagaatttggaacatagaaacgtgcccaaatgtttgtaacactgtcaatgataatgtccctt |
50264344 |
T |
|
| Q |
101 |
gaagtcacatttatttttggacatagatcagaagtgacacatggaacaatgttgggtcgttctatatatccatctttgtgtacgttaattagccctttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
50264345 |
gaagtcacatttatttttggacatagatcagaagtgacacatggaacaatgttgggtcgttctatatatccatctttatgtactttaattagccctttaa |
50264444 |
T |
|
| Q |
201 |
tttcctcaacaacacaagaaccttgg---tgttgatggtttttaccatgttgtgggataaggtttaggtttgaggtaagagcagtcataggttttggtga |
297 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50264445 |
tttcctcaacaacacaagaaccttggtgttgttgatggtttttaccatgttgtgggataaggtttaggtttgaggtaagagcagtcataggttttggtga |
50264544 |
T |
|
| Q |
298 |
ttgaagcaagaaacaaaggaatgaatgaaatttatttgggggtgattgggtttgt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50264545 |
ttgaagcaagaaacaaaggaatgaatgaaatttatttgggggtgattgggtttgt |
50264599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University