View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16143_low_12 (Length: 364)
Name: NF16143_low_12
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16143_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 346
Target Start/End: Original strand, 22626689 - 22627021
Alignment:
| Q |
15 |
atgaaaagagtttacactttgttatgtgtttcaaatcaagattcatggaggaaagttagcaatggacaaagagacaatattgctaagtttactgttttga |
114 |
Q |
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| T |
22626689 |
atgaaaagagtttacactttgttgtgtgtttcaaatcaagtttcttggaggaaagttagcaatggacaaggagacaataatgctaggtttactgttttga |
22626788 |
T |
|
| Q |
115 |
agttgttatttcaattctattgttttatttagttttgaattttgaatagtatcatttgttttccctgcaagctatttttgcatatttcaagtttctgctc |
214 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || ||||||| |||||||||||||||| |
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| T |
22626789 |
agttgttatttctattctattgttttatttagttttgaatttttaatagtatcatttgatttccctgcaagccatatttgcatctttcaagtttctgctc |
22626888 |
T |
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| Q |
215 |
gtgtttgtattgaattggata-ttggttatattatatcttcattggatttgtg-ttttgtgtgtttgtgcgcctaaacccttgtaaccatgaaacactgt |
312 |
Q |
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|||||| | | |||||||||| ||||||||||||||||||||||| |||| || |||||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
22626889 |
gtgtttctgtcgaattggatatttggttatattatatcttcattgcatttatgtttttgtgtgtgtgcgcgcctaaa-ccttgtaaccatgaaacactgt |
22626987 |
T |
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| Q |
313 |
cactcatcaagggttcaatcagttatgaactatt |
346 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
22626988 |
cactcatcaagggttcaaccagttatgaactatt |
22627021 |
T |
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