View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16143_low_14 (Length: 303)
Name: NF16143_low_14
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16143_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 292
Target Start/End: Complemental strand, 32102730 - 32102456
Alignment:
| Q |
18 |
gttagtgctgaggaagcatctctacaaagaagccagcaactaagagaactctatgaatcattgtctgccggagagactaatccaccaactcgtcgtccat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
32102730 |
gttagtgctgaggaagcatctctacaaagaagccagcaactaagagaactctatgaatcattgtctgccggagagacaaatccaccaactcgtcgtccat |
32102631 |
T |
|
| Q |
118 |
gtgcttccttgtcacctgaggacctaacagaatctgaatggttctatttgatgtgtgtctctttctcttttcctcctggtgtagggtaagtaaagtaact |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32102630 |
gtgcttccttgtcacctgaggacctaacagaatctgaatggttctatttgatgtgtgtctctttctcttttcctcctggtgtagggtaagtaaagtaact |
32102531 |
T |
|
| Q |
218 |
caccttcttccattatttcttatctagctagctctcttttatgatatatcaatttcatttagaaaaccaacctat |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
32102530 |
caccttcttccattatttcttatctagctagctctcttttatgatatatcaatttcattcagaaaactaacctat |
32102456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University