View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16143_low_17 (Length: 269)
Name: NF16143_low_17
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16143_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 43206613 - 43206876
Alignment:
| Q |
10 |
cgaagaaaatagaagaaagatgaaaacaagaaaccaagctttaagagatgcaatatacagtttattacaatatataggagtttctctttgatttctattg |
109 |
Q |
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| T |
43206613 |
cgaataaaatagaagaaagatgaaaacaagaaaccaagctttaagagatgcaatatacagtttattacaatatataggagtttctctttgatttctatta |
43206712 |
T |
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| Q |
110 |
tggactatgtaacttgcttagcaagctacttgagttcaagtgctattgtactagttagtacacaatagttagcataggcttcctattttg----tataca |
205 |
Q |
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| T |
43206713 |
tagactatgtaacttgcttagcaagctacttgagttcaagtgctattctactagttagtacacaatagttagcataggcttcctattttgtgtatataca |
43206812 |
T |
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| Q |
206 |
tgttgtactgaacctttccaattaatgaaacaatgagtattcattcatttctctcaattcataa |
269 |
Q |
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| T |
43206813 |
tgttgtactgaacctttccaattaatgaaacaatgagtattcattcatttctctcaattcataa |
43206876 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 18832153 - 18832229
Alignment:
| Q |
72 |
tattacaatatataggagtttctctttgatttctattgtggactatgtaacttgcttagcaagctacttgagttcaa |
148 |
Q |
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| T |
18832153 |
tattacaataaatcggagtttctctttgttttttagtttagactatgtaacttgcatagcaagccactagagttcaa |
18832229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 18835568 - 18835499
Alignment:
| Q |
200 |
tatacatgttgtactgaacctttccaattaatgaaacaatgagtattcattcatttctctcaattcataa |
269 |
Q |
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| T |
18835568 |
tatacatgatatacggaaccattctagtcaatcaaacaatgagtattcattcacttctctcaattcataa |
18835499 |
T |
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