View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16143_low_19 (Length: 251)
Name: NF16143_low_19
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16143_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2376454 - 2376684
Alignment:
| Q |
1 |
gaataatgttttatgatttctgcaggggataatggaggatcctaactttctccatcactttaataatcacttaagctctattgataccaataacttaact |
100 |
Q |
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| T |
2376454 |
gaataatgttttatgatttctgcaggggataatggaggatcctaactttctccatcactttaataatcacctaagctctattgataccaataacttaact |
2376553 |
T |
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| Q |
101 |
gcttctgcttttggagatgctttacaaaagcatattttgtccaataatccaaactttaacaacaaaacatgcatggagacttcgcctaccggaaatgaaa |
200 |
Q |
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| T |
2376554 |
gcttctgcttttggagatgctttacaaaagcatattttgtccaataatccaaactttaacaacaaaacatgcatggagacttcgcctaccggaaatgaaa |
2376653 |
T |
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| Q |
201 |
gaccggcgaaacagttaagaaataacagctg |
231 |
Q |
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| T |
2376654 |
gaccggcgaaacagttaagaaataacagctg |
2376684 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 29258703 - 29258769
Alignment:
| Q |
91 |
taacttaactgcttctgcttttggagatgctttacaaaagca-tattttgtccaataatccaaactt |
156 |
Q |
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|||||||||||| |||| |||||||||||||| |||| || | |||||||||||||||||||||| |
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| T |
29258703 |
taacttaactgcatctgtatttggagatgcttttgaaaaacaattttttgtccaataatccaaactt |
29258769 |
T |
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