View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16143_low_2 (Length: 683)
Name: NF16143_low_2
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16143_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 1 - 667
Target Start/End: Original strand, 564330 - 564994
Alignment:
| Q |
1 |
gatcggttccttgaatcggtacacaacctgggattttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
564330 |
gatcggttccttgaatcggtacacaacctgggattttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatgaaa |
564429 |
T |
|
| Q |
101 |
acaaagtgatagcactgtggctgatgaaggaaaatatgtatatgataaaatgttgagtttcttggcaaatgagaacacttcataggcaaaataatcagct |
200 |
Q |
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| T |
564430 |
acaaagtgataatactgtggctgatgaaggaaaatatgtatatgataaaatgttgagtttcttggcaaatgagaacacttcataggcaaaataatcagct |
564529 |
T |
|
| Q |
201 |
attatagcaactagttttgatgtttttgttttcaatgcatcaatgatagatggcatagttagagacattgaaagaggaagtttgagtgtagggacagttt |
300 |
Q |
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| T |
564530 |
attatagcaactagttttgatgtttttgttttcaatgcatcaatgatatatggcatagttagagacattgaaagaggaagtttgagtgtagggacagttt |
564629 |
T |
|
| Q |
301 |
gtggtggcaagttgattggtggaagaacaatggtatctacattgagagaagaaagagaagcaataatggatttggaagcattggaaagtgaatctagtac |
400 |
Q |
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| T |
564630 |
gtggtggcaagttgattggtggaagaacaatggtatctacattgagagaagaaagagaagcaataatggatttggaagcattggaaagtgaatctagtac |
564729 |
T |
|
| Q |
401 |
tggaatgattaaggtgatgtgaaacttgttaggatgaagattaaggagtttcttgatgaactcagaaattgctatttgatgactcacaatggggactgaa |
500 |
Q |
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| T |
564730 |
tggaatgattaaggtgatgtgaaacttgttaggatgaagattaaggagtttcttgatgaactcagaaattgctatttgatgactcacaatggggactgaa |
564829 |
T |
|
| Q |
501 |
accacagcaatgtgtgtttttctttccatggaaatttgattagtttaggctctgatctgtgttaatggaaggttgatttggttaattaaataggataatt |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
564830 |
accacagcaatgtgtgtttttctttccatggaaatttgattagtttaggctctgatccgtgttaatggaaggttgatttggttaattaaataagataatt |
564929 |
T |
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| Q |
601 |
aagacaagaacaaaacaaacggctagttgtcatgttgtacatatgatagtgtaaacaagagtaattt |
667 |
Q |
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| T |
564930 |
aagacaagaac--aacaaacggctagttgtcatgttgtacatatgatagtgtaaacaagagtaattt |
564994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 874024 - 874093
Alignment:
| Q |
29 |
tgggattttgattggttcttgcaagtctttaaactcaccagaaattgtttcatctagaacttttgaatga |
98 |
Q |
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| T |
874024 |
tgggattatgattggttcttgcaagtctttaaattcaccagaaattattttatctagaacttttaaatga |
874093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 494 - 549
Target Start/End: Original strand, 874139 - 874194
Alignment:
| Q |
494 |
gactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattagtttagg |
549 |
Q |
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|||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
874139 |
gacttaaaccaaagcaatgaatgtttttctatccatggaaatttgattagtttagg |
874194 |
T |
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