View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16143_low_20 (Length: 250)
Name: NF16143_low_20
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16143_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 47989998 - 47990237
Alignment:
| Q |
11 |
cagagaaaacgttaggaattcctactgaatactgatattccgaataatcacggttcgttacactaaccaaaagctgttgacaaatgcatcagacaccaga |
110 |
Q |
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| T |
47989998 |
cagagaaaacgttaggaattcctaccgaatactgatattcctaataatcacggttcgttatactaaccaaaagctgttgacaaatgcatcagacaccaga |
47990097 |
T |
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| Q |
111 |
tgatgaccactacccgaagcccctcctgcttcaccaacccatgcttgagctgaggttcttgaactttgaagtacatttttaaggctgctgaatatgccag |
210 |
Q |
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| T |
47990098 |
tgatgaccactacccgaagcccctcctgcttcaccaacccatgcttgagctgaggttcttgaactttgaagtacatttttaaggctgctgaatatgccag |
47990197 |
T |
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| Q |
211 |
ccactccattaagagaggatggatcgagaattctttcaac |
250 |
Q |
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| T |
47990198 |
ccactccattaagagaggatggatcgagaattctttcaac |
47990237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 247
Target Start/End: Original strand, 47979499 - 47979675
Alignment:
| Q |
71 |
cactaaccaaaagctgttgacaaatgcatcagacaccagatgatgaccactacccgaagcccctcctgcttcaccaacccatgcttgagctgaggttctt |
170 |
Q |
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| T |
47979499 |
cactaaccagaagctgttgacaaatgcatcagacacaagatgatggccactattccaagcaccaccagcctctccaacccatgctttagctgtggtgctt |
47979598 |
T |
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| Q |
171 |
gaactttgaagtacatttttaaggctgctgaatatgccagccactccattaagagaggatggatcgagaattctttc |
247 |
Q |
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| T |
47979599 |
gatctttgaagtacatttttaaggctgctgaatgtgccagccactccatcaagataggttggatcaagaattttttc |
47979675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 38357003 - 38357185
Alignment:
| Q |
67 |
gttacactaaccaaaagctgttgacaaatgcatcagacaccagatgatgaccactacccgaagcccctcctgcttcaccaacccatgcttgagctgaggt |
166 |
Q |
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||||||||||||| |||||||||| |||||||||||| || |||||||| |||||| ||| ||||| || |||||||||||||||| ||||| | | |
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| T |
38357003 |
gttacactaaccagaagctgttgaaaaatgcatcagatacaagatgatggccactatggtgagcacctccagcctcaccaacccatgctttagctgtgat |
38357102 |
T |
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| Q |
167 |
tcttgaactttgaagtaca--tttttaaggctgctgaatatgccagccactccattaagagaggatggatcgagaattctttc |
247 |
Q |
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| T |
38357103 |
tcctgaactttgaagtacacatttttaaggctgctgaatgtgccagccactccatcaagataggctggatcgagaattttttc |
38357185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 22877279 - 22877384
Alignment:
| Q |
90 |
acaaatgcatcagacaccagatgatgaccactacccgaagcccctcctgcttcaccaacccatgcttgagctgaggttcttgaactttgaagtacatttt |
189 |
Q |
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||||||||||| || || |||||||| ||||| |||||||||||| ||||||||||||||| |||||||||| || ||||| ||| ||||||| |
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| T |
22877279 |
acaaatgcatcggatacaagatgatggccactgttataagcccctcctgactcaccaacccatgctgttgctgaggttcctgtactttcaagaacatttt |
22877378 |
T |
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| Q |
190 |
taaggc |
195 |
Q |
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| T |
22877379 |
tcaggc |
22877384 |
T |
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