View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16143_low_24 (Length: 203)

Name: NF16143_low_24
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16143_low_24
NF16143_low_24
[»] chr1 (3 HSPs)
chr1 (1-92)||(40036900-40036991)
chr1 (1-42)||(40031556-40031597)
chr1 (149-189)||(40037049-40037089)
[»] chr5 (1 HSPs)
chr5 (1-61)||(1346828-1346887)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 40036900 - 40036991
Alignment:
Q  1 tggatttgctccatgtgttttgagcataatttcccaagcttgttttattgttatagcatggtagccccccattgacttattaaaaacaaagc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036900 tggatttgctccatgtgttttgagcataatttcccaagcttgttttattgttatagcatggtagccccccattgacttattaaaaacaaagc 40036991  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40031556 - 40031597
Alignment:
Q  1 tggatttgctccatgtgttttgagcataatttcccaagcttg 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40031556 tggatttgctccatgtgttttgagcataatttcccaagcttg 40031597  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 40037049 - 40037089
Alignment:
Q  149 gttcagcaaaatctttctctaaaataccccataaccacagg 189  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  40037049 gttcagcaaaatctttctctaaaataccccataaccacagg 40037089  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1346887 - 1346828
Alignment:
Q  1 tggatttgctccatgtgttttgagcataatttcccaagcttgttttattgttatagcatgg 61  Q
    ||||| |||| ||| ||||||||||||| |||||||| |||| ||| ||||||||||||||    
T  1346887 tggatctgcttcatatgttttgagcata-tttcccaaacttgctttgttgttatagcatgg 1346828  T

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