View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16143_low_4 (Length: 469)
Name: NF16143_low_4
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16143_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 3599714 - 3599258
Alignment:
| Q |
1 |
aaatattatataatttgtctgcaaacaaaggtattaacattagaatgatgattttactagctagtacaaagagaaactcactattatggtcacagagttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3599714 |
aaatattatataatttgtctgcaaacaaaggtattaacattagaatgatgattttactagctagtacaaagagaaactcactattatggtcacagagttg |
3599615 |
T |
|
| Q |
101 |
gtctcttcgtcaagcattatgttaccatattgcaaatcattgtggcaaaaccctatccgttgatgcgagcctgacagctccttttccaaaatagagattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3599614 |
gtctcttcgtcaagcattatgttaccatattgcaaatcattgtggcaaaaccctatccgttgatgcgagcctgacagctccttttccaaaatagagattt |
3599515 |
T |
|
| Q |
201 |
ccttgtcgaccgtgtccaaataaaaagcttcgacttcttttggagaagaaagacgtttggcctcactaagccaatttctgaagcattgaaataaaatagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3599514 |
ccttgtcgaccgtgtccaaataaaaagcttcgacttcttttggagaagacaaacgtttggcctcactaagccaatttctgaagcattgaaataaaatagg |
3599415 |
T |
|
| Q |
301 |
ctgagaaatgatgttgaggttgaaacttaactatttaagtaaaatttttaaacaaattaaacacaactaaatt------cttattcttattatgtacata |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3599414 |
ctgagaaatgatgttgaggttgaaacttaactatttaagtaaattttttaaacaaattaaacacaactaaattcttactcttattcttattatgtacata |
3599315 |
T |
|
| Q |
395 |
cctcaatgtaggccaaagattggctttcttttcaccaggcatatctagatcatggaa |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3599314 |
cctcaatgtaggccaaagattggctttcttttcaccaggcatatctagatcatggaa |
3599258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 68 - 163
Target Start/End: Original strand, 15545988 - 15546083
Alignment:
| Q |
68 |
aaagagaaactcactattatggtcacagagttggtctcttcgtcaagcattatgttaccatattgcaaatcattgtggcaaaaccctatccgttga |
163 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
15545988 |
aaagagaaactcactattatggtcacagaatttgttacttcatcaagcatgatgttaccatattgtaaatcattgtggcaaaaccctatgcgttga |
15546083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University