View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16143_low_5 (Length: 464)

Name: NF16143_low_5
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16143_low_5
NF16143_low_5
[»] chr6 (3 HSPs)
chr6 (10-448)||(18263088-18263525)
chr6 (135-181)||(6074032-6074078)
chr6 (394-427)||(32577471-32577504)
[»] chr8 (2 HSPs)
chr8 (394-439)||(29096953-29096998)
chr8 (142-174)||(14227003-14227035)
[»] chr2 (5 HSPs)
chr2 (396-436)||(35198240-35198280)
chr2 (131-174)||(32102875-32102918)
chr2 (131-182)||(42205842-42205893)
chr2 (394-439)||(39459791-39459836)
chr2 (382-438)||(31980826-31980882)
[»] chr1 (1 HSPs)
chr1 (394-438)||(26462652-26462696)
[»] chr4 (1 HSPs)
chr4 (391-434)||(51383992-51384035)
[»] chr3 (5 HSPs)
chr3 (131-174)||(18268020-18268063)
chr3 (393-426)||(28525028-28525061)
chr3 (398-439)||(49636837-49636878)
chr3 (142-174)||(9198645-9198677)
chr3 (394-438)||(18268012-18268056)
[»] chr7 (3 HSPs)
chr7 (397-439)||(16082688-16082730)
chr7 (140-174)||(40826525-40826559)
chr7 (128-165)||(13859519-13859556)
[»] chr5 (5 HSPs)
chr5 (395-445)||(28322242-28322292)
chr5 (393-426)||(4991152-4991185)
chr5 (394-423)||(13069468-13069497)
chr5 (141-174)||(14835707-14835740)
chr5 (130-166)||(28322241-28322277)


Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 10 - 448
Target Start/End: Complemental strand, 18263525 - 18263088
Alignment:
Q  10 gacacatgtgactacattcaatttctcaagttattactggtgttggtgttgacgtgtcatatagacaaggacactacacataacaccggatatgatattc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18263525 gacacatgtgactacattcaatttctcaagttattactggtgttggtgttgacgtgtcatatagacaaggacactacacataacaccggatatgacattc 18263426  T
Q  110 acattgacaggctgacacttgacactaatcataatttgagaaaatgaattaattgaacataatcatgtgtgtcccagacacgaaacatgcccgacacgtc 209  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  18263425 acattgacaggctgacacttgacactaattataatttgagaaaatgaattaattgaacataatcatgtgtgtcccagacacgaaacatgcctgacacgta 18263326  T
Q  210 ttcatcagagttgtttcatagtcatcaatatgaatataatcaacaatatttacaaaagaaagttgaaattttatagtttactacgctctgattctaactt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18263325 ttcatcagagttgtttcatagtcatcaatatgaatataatcaacaatatttacaaaagaaagttgaaattttatagtttactacgctctgattctaactt 18263226  T
Q  310 taaagcacggacacaaacattagatacctttgtagcttatagctccgacacctctgattcaatatgttttcagtgtctgactttgacacatgtgactaca 409  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  18263225 taaagcacgaacacaaacattagatacctttgtagcttatagcaccgacacctctgattcatcatgttttcagtgtctggc-ttgacacatgtgactaca 18263127  T
Q  410 ttcaattaattcattttcataaattattactcgtgtagt 448  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18263126 ttcaattaattcattttcataaattattactcgtgtagt 18263088  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 6074032 - 6074078
Alignment:
Q  135 taatcataatttgagaaaatgaattaattgaacataatcatgtgtgt 181  Q
    |||| ||||||||||||||||||||| |||||| ||||||| |||||    
T  6074032 taataataatttgagaaaatgaattatttgaacgtaatcatatgtgt 6074078  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Original strand, 32577471 - 32577504
Alignment:
Q  394 gacacatgtgactacattcaattaattcattttc 427  Q
    ||||||||||| ||||||||||||||||||||||    
T  32577471 gacacatgtgattacattcaattaattcattttc 32577504  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 29096998 - 29096953
Alignment:
Q  394 gacacatgtgactacattcaattaattcattttcataaattattac 439  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||    
T  29096998 gacacatgtgattacattcaattaatttattttcttaaattattac 29096953  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 14227003 - 14227035
Alignment:
Q  142 aatttgagaaaatgaattaattgaacataatca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  14227003 aatttgaaaaaatgaattaattgaacataatca 14227035  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 35198240 - 35198280
Alignment:
Q  396 cacatgtgactacattcaattaattcattttcataaattat 436  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  35198240 cacatgtgattacattcaattaattcattttcttaaattat 35198280  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 32102918 - 32102875
Alignment:
Q  131 acactaatcataatttgagaaaatgaattaattgaacataatca 174  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||    
T  32102918 acactaatgataatttgagaaaataaattaattgaatataatca 32102875  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 42205893 - 42205842
Alignment:
Q  131 acactaatcataatttgagaaaatgaattaattgaacataatcatgtgtgtc 182  Q
    |||| ||| ||||||||||||||||| ||||||||| |||||||| ||||||    
T  42205893 acaccaataataatttgagaaaatgacttaattgaaaataatcatatgtgtc 42205842  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 39459836 - 39459791
Alignment:
Q  394 gacacatgtgactacattcaattaattcattttcataaattattac 439  Q
    ||||| ||||| |||||||||||||||||||| | |||||||||||    
T  39459836 gacacgtgtgattacattcaattaattcatttccttaaattattac 39459791  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 31980882 - 31980826
Alignment:
Q  382 gtgtctgactttgacacatgtgactacattcaattaattcattttcataaattatta 438  Q
    |||||||||  |||| | ||||| ||||||||||||| |||||||| ||||||||||    
T  31980882 gtgtctgacactgactcgtgtgattacattcaattaactcattttcgtaaattatta 31980826  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 26462652 - 26462696
Alignment:
Q  394 gacacatgtgactacattcaattaattcattttcataaattatta 438  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||||    
T  26462652 gacacatgtgattacattcaattatttcattttcttaaattatta 26462696  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 434
Target Start/End: Original strand, 51383992 - 51384035
Alignment:
Q  391 tttgacacatgtgactacattcaattaattcattttcataaatt 434  Q
    |||||||||||||| |||||||||||| |||||||||| |||||    
T  51383992 tttgacacatgtgattacattcaattatttcattttcacaaatt 51384035  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 18268063 - 18268020
Alignment:
Q  131 acactaatcataatttgagaaaatgaattaattgaacataatca 174  Q
    ||||| || |||||||||||||||||||||||||||| ||||||    
T  18268063 acactgataataatttgagaaaatgaattaattgaacgtaatca 18268020  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 426
Target Start/End: Complemental strand, 28525061 - 28525028
Alignment:
Q  393 tgacacatgtgactacattcaattaattcatttt 426  Q
    |||||||||||| |||||||||||||||||||||    
T  28525061 tgacacatgtgattacattcaattaattcatttt 28525028  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 439
Target Start/End: Original strand, 49636837 - 49636878
Alignment:
Q  398 catgtgactacattcaattaattcattttcataaattattac 439  Q
    ||||||| ||||||||||||||||||||||  ||||||||||    
T  49636837 catgtgattacattcaattaattcattttctcaaattattac 49636878  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 9198677 - 9198645
Alignment:
Q  142 aatttgagaaaatgaattaattgaacataatca 174  Q
    ||||||| |||||||||||||||||||||||||    
T  9198677 aatttgaaaaaatgaattaattgaacataatca 9198645  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 18268012 - 18268056
Alignment:
Q  394 gacacatgtgactacattcaattaattcattttcataaattatta 438  Q
    ||||||||||| ||| ||||||||||||||||||  |||||||||    
T  18268012 gacacatgtgattacgttcaattaattcattttctcaaattatta 18268056  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 16082730 - 16082688
Alignment:
Q  397 acatgtgactacattcaattaattcattttcataaattattac 439  Q
    |||||| | ||||||||||||||| ||||||||||||||||||    
T  16082730 acatgtaattacattcaattaatttattttcataaattattac 16082688  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 40826525 - 40826559
Alignment:
Q  140 ataatttgagaaaatgaattaattgaacataatca 174  Q
    ||||||||||||||||||||||||||| |||||||    
T  40826525 ataatttgagaaaatgaattaattgaatataatca 40826559  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 13859519 - 13859556
Alignment:
Q  128 ttgacactaatcataatttgagaaaatgaattaattga 165  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  13859519 ttgacactagtaataatttgagaaaatgaattaattga 13859556  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 395 - 445
Target Start/End: Complemental strand, 28322292 - 28322242
Alignment:
Q  395 acacatgtgactacattcaattaattcattttcataaattattactcgtgt 445  Q
    |||||||||| ||||||||||||||||||||||  ||||||| ||| ||||    
T  28322292 acacatgtgattacattcaattaattcattttctcaaattatcactagtgt 28322242  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 426
Target Start/End: Original strand, 4991152 - 4991185
Alignment:
Q  393 tgacacatgtgactacattcaattaattcatttt 426  Q
    |||||||||||| |||||||||||||||||||||    
T  4991152 tgacacatgtgattacattcaattaattcatttt 4991185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 423
Target Start/End: Complemental strand, 13069497 - 13069468
Alignment:
Q  394 gacacatgtgactacattcaattaattcat 423  Q
    ||||||||||||||||||||||||||||||    
T  13069497 gacacatgtgactacattcaattaattcat 13069468  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 14835707 - 14835740
Alignment:
Q  141 taatttgagaaaatgaattaattgaacataatca 174  Q
    ||||||||||||||||||||||||||| ||||||    
T  14835707 taatttgagaaaatgaattaattgaacgtaatca 14835740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 28322241 - 28322277
Alignment:
Q  130 gacactaatcataatttgagaaaatgaattaattgaa 166  Q
    ||||||| | |||||||||||||||||||||||||||    
T  28322241 gacactagtgataatttgagaaaatgaattaattgaa 28322277  T

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