View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16143_low_9 (Length: 379)
Name: NF16143_low_9
Description: NF16143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16143_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 43207126 - 43207487
Alignment:
| Q |
1 |
acatgttacttagagttcacaaatggcaagaaccttaaaggccttcgcaacatctcaataactctcagcaatgtaatttaatt-attttatctaggatgt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || || |||||||||||||||| |
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| T |
43207126 |
acatgttacttagagttcacaaatggcaagaaccttaaaggccttcgcaacatctcaataactctcagctcagcaatgtagtttattttatctaggatgt |
43207225 |
T |
|
| Q |
100 |
aagctttaggtgcttcgcgacaatatgcgaaattaatgaataaatttctatccttagcgaactttgtttaaaattcctgttcagttcaggaactgtacga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43207226 |
aagctttaggtgcttcgcgacaatatgcgaaattaatgaataaatttctatccttagcgaactttgtttaaaattcctgttcagttcaggaactgtacga |
43207325 |
T |
|
| Q |
200 |
aaagctttagnnnnnnnatagtgctaattcgattcagtttagcagttcagttcagatttttggtgtttttgaatagccctagtttgattgtgttgcattc |
299 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43207326 |
aaagcttcagtttttttatagtgctaattcgattcagtttagcagttcagttcagatttttggtgtttttgaatagccctagtttgattgtgtagcattc |
43207425 |
T |
|
| Q |
300 |
attcgtgaactaaaaatgcatggttattctatttagtattcaagggggagccttggcgcaac |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43207426 |
attcgtgaactaaaaatgcatggttattctatttagtattcaagggggagccttggcgcaac |
43207487 |
T |
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