View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16144_high_3 (Length: 387)
Name: NF16144_high_3
Description: NF16144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16144_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 39494581 - 39494948
Alignment:
| Q |
1 |
aactctctaaagagtcgtcgaaataaaatgaagtcattcatgttacttagtttagaaattgaacattaatccacctgacccacccttacaaatttggttt |
100 |
Q |
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| T |
39494581 |
aactctctaaagagtcg---aaataaaatgaagtcattcatgttacttagtttagaaattgaacattaatccacctgacccacccttacaaatttggttt |
39494677 |
T |
|
| Q |
101 |
gtgtttttgttctcaaaactagaaaaaacatgaacaaattttgagaataaattaatataaaacctgtctgagatgaactttagtaaaatttctgttttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39494678 |
gtgtttttgttctcaaaactagaaaaaacatgaacaaattttgagaataaattaatataaaacctgtctgagatgaactttagtaaaatttctgttttca |
39494777 |
T |
|
| Q |
201 |
atcactaaactttccattnnnnnnncttaaatggaagacggaggggtgcatcataatttatcatgtataggatagtggtaccatgtgtcaatacatcatt |
300 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39494778 |
atcactaaactttccattaaaaaaacttaaatggaaggcggaggggtgcatcataatttatcatgtataggatagtggtaccatgtgtcaatacatcatt |
39494877 |
T |
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| Q |
301 |
ggtctgcagtgccatctggcacatatcaacttgccatgtaagaactaccatgtagcaagtacctaaatgga |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39494878 |
ggtctgcagtgccatctggcacatatcaacttgccatgtaagaactaccatgtagcaagtacctaaatgga |
39494948 |
T |
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