View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16144_low_1 (Length: 585)
Name: NF16144_low_1
Description: NF16144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16144_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 570
Target Start/End: Complemental strand, 21612932 - 21612378
Alignment:
| Q |
6 |
ttcgtgctgcgtgatgcannnnnnncaggaaaagagggttcagtttgtattgagggagggatagaagtaggctactgttttttcggtttaaattgtaata |
105 |
Q |
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| T |
21612932 |
ttcgtgctgcgtgatgcatttttttaaggaaaagagggttcagtttgtattgagggagggatagaagtaggctactgttttttcgatttgaattgtaata |
21612833 |
T |
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| Q |
106 |
tgttgtttgcctttcacttcatgtgtactcttcttgttatatatgggttagagtactccttctatttcaataaatcattttgcttgttaaaagaaattat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||||||||| |
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| T |
21612832 |
tgttgtttgcctttcacttcatgtgtactcttcttgttatatatgggttagagtaatccatgtatttcaataattcattttgcttgttaaaagaaattat |
21612733 |
T |
|
| Q |
206 |
cgagtgaaaatgagaaatgataaatatatcaatttcgaaatgatttttgatattctcttgggtaaaaaacatcccaaatnnnnnnnnnnntccaaatgga |
305 |
Q |
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| T |
21612732 |
cgagtgaaaatgagaaatgataaatatatcaatttcgaaatgatttttgatattctcttgggtaaaaaacatcccaaat---aaaaaaaattcaaatggg |
21612636 |
T |
|
| Q |
306 |
aatttttgaaaaaacttagtcggtctttatcataagagacaattcactttttaatattcaatgattgatgtatttagtttataatataaactatgtatat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||| |||||||| || |
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| T |
21612635 |
aatttttgaaaaaacttagtcggtctttatcataagagacaattcactttttgatattcaatgactgatgtatttagtttaaaacatagactatgtacat |
21612536 |
T |
|
| Q |
406 |
cagttatttaataaatttaaaatttttattgtttcttatcgtataaacgggggaagtacaatttaacgttaactgttagatttataaatataatagctaa |
505 |
Q |
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| T |
21612535 |
cagttatttaatgaacttaaaaaatttattgtttcttatcgtaaaaac-ggggaagtacaatttaac-------gttagatttataaatataatagctaa |
21612444 |
T |
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| Q |
506 |
tcaacaacttagccagtccgt-nnnnnnnnncatatgatcaacatatcatagtagcatgttgtgtt |
570 |
Q |
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| T |
21612443 |
tcaacaacttagccggtccgtaaaaaaaaaacatatgatcaacatatcatagtagcatgttgtgtt |
21612378 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 4995744 - 4995801
Alignment:
| Q |
371 |
tgatgtatttagtttataatataaactatgtatatcagttatttaataaatttaaaat |
428 |
Q |
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|||||||| || | |||||||||||||| || |||| |||||||||||||||||||| |
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| T |
4995744 |
tgatgtatctaatctataatataaactagataaatcatttatttaataaatttaaaat |
4995801 |
T |
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