View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16144_low_2 (Length: 485)
Name: NF16144_low_2
Description: NF16144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16144_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 41418172 - 41417715
Alignment:
| Q |
19 |
ggaccagctttggtgttggagattgtgatgacctttggattggtgtacacagtgtatgctacagccgttgacccaaagaagggtaacattggaattattg |
118 |
Q |
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| T |
41418172 |
ggaccagctttggtgttggagattgtgatgacctttggattggtgtacacagtgtatgctacagccgttgacccaaagaagggtaacattggaattattg |
41418073 |
T |
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| Q |
119 |
caccaattgctattggtttcatcgttggtgctaacattttggttggtggagccttcaccggagcatccatgaacccagcagtgtcattcgggcctgctgt |
218 |
Q |
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| T |
41418072 |
caccaattgctattggtttcatcgttggtgctaacattttggttggtggagccttcaccggagcatccatgaacccagcagtgtcattcgggcctgctgt |
41417973 |
T |
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| Q |
219 |
tgtgagctggagctggtccaaccactgggtctactgggctggcccacttatcggtggtggaattgctggacttgtctatgaggttctcttcatcaacagc |
318 |
Q |
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| T |
41417972 |
tgtgagctggagctggtccaaccactgggtctactgggctggcccacttatcggtggtggaattgctggacttgtctatgaggttctcttcatcaacagc |
41417873 |
T |
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| Q |
319 |
acccacgagcagctcccaactactgactactagatgggaaatgaaatttgaaattgtgtattattgaattcctcgatgatttctttctttct-ttttatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
41417872 |
acccacgagcagctcccaactactgactactagatgggaaatgaaatttgaaattctgtattattgaattcctcgatgatttctttctttttattttatg |
41417773 |
T |
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| Q |
418 |
tgaatg-taatttccttgcttgtgtccttttttaattattgagggtgggttgtttctt |
474 |
Q |
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| T |
41417772 |
tgaatgttaatttcctttcttgtgtccttttttaattattgagggtggattgtttctt |
41417715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 7656674 - 7656855
Alignment:
| Q |
40 |
attgtgatgacctttggattggtgtacacagtgtatgctacagccgttgacccaaagaagggtaacattggaattattgcaccaattgctattggtttca |
139 |
Q |
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| T |
7656674 |
attgtgatgacatttggattggtatacacagtttatgcaacagcagtagatccaaaaaaagggaatataggaattattgctccaattgcaattggtgtta |
7656773 |
T |
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| Q |
140 |
tcgttggtgctaacattttggttggtggagccttcaccggagcatccatgaacccagcagtgtcattcgggcctgctgttgt |
221 |
Q |
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| T |
7656774 |
ttgttggtgcaaatatcttagctggtggagcatttgatggtgcatccatgaatccagctgtgtcatttgggcctgctgttgt |
7656855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 23340273 - 23340471
Alignment:
| Q |
31 |
gtgttggagattgtgatgacctttggattggtgtacacagtgtatgctacagccgttgacccaaagaagggtaacattggaattattgcaccaattgcta |
130 |
Q |
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| T |
23340273 |
gtgtttgagattgtgatgacttttggtttggtttacacagtgtatgctactgcagtagacccaaaaaatggtagcctaggaacaattgctccaattgcaa |
23340372 |
T |
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| Q |
131 |
ttggtttcatcgttggtgctaacattttggttggtggagccttcaccggagcatccatgaacccagcagtgtcattcgggcctgctgttgtgagctgga |
229 |
Q |
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| T |
23340373 |
ttggtttcatagttggagctaacatcttagcaggtggtgcatttgatggtgcatccatgaacccagcagtttcttttgggcctgctgttgttagctgga |
23340471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 52102311 - 52102271
Alignment:
| Q |
181 |
gcatccatgaacccagcagtgtcattcgggcctgctgttgt |
221 |
Q |
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| T |
52102311 |
gcatcaatgaacccagctgtgtctttcgggcctgctgttgt |
52102271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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