View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16144_low_3 (Length: 464)
Name: NF16144_low_3
Description: NF16144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16144_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 85 - 446
Target Start/End: Complemental strand, 4098771 - 4098410
Alignment:
| Q |
85 |
atgtgcgatgtgtttatttagttccaagaactctacataaattatccatcctcatcgttatccacttggtggcaaatagtgtacaaatcctaaaatctag |
184 |
Q |
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| T |
4098771 |
atgtgcgatgtgtttatttagttccaagaactctacataaattatccatcctcatcgttatccacttggtggcaaatagtgtacaaatcccaaaatctag |
4098672 |
T |
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| Q |
185 |
gagtgatggtgcttcaatggtcattaattggtgaatattgttttttccttcctcttcatgatgttagctacaaaaatagtacagtggtcaaaatagaaac |
284 |
Q |
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| T |
4098671 |
gagtgatggtgcttcaatggtcattaattggtgaatattgttttttccttcctcttcatgatgttagctacaaaaatagtacagtggtcaaaatagaaac |
4098572 |
T |
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| Q |
285 |
aaaattgtattatccagcttgcaacgacgttcgtacggtactattaattactccaaaaatctgcatgaatatattcttaaatcaaagatcacaatgtatc |
384 |
Q |
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| T |
4098571 |
aaaattgtattatccagcttgcaacgacgttcgtacggtactattaattactccaaaaatctgcatgaatatattcttaaatcaaagatcacaatgtatc |
4098472 |
T |
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| Q |
385 |
tcttaagattagtgtataacaatcaactagttgaagtttgtttaaactttaaagtagacgtt |
446 |
Q |
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| T |
4098471 |
tcttaagattagtgtataacaatcaactagttgaagtttgtttaaactttaaagtagacgtt |
4098410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 331 - 430
Target Start/End: Complemental strand, 945538 - 945440
Alignment:
| Q |
331 |
attactccaaaaatctgcatgaatatattcttaaatcaaagatcacaatgtatctcttaagattagtgtataacaatcaactagttgaagtttgtttaaa |
430 |
Q |
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| T |
945538 |
attactccaaacatctgcatgaatatattcttaaatcaac-atcacaatgtatctcttaagtttagtgtataataatcaacttgttgaagtttgtttaaa |
945440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4098824 - 4098787
Alignment:
| Q |
1 |
tttatttttccaaaaatacccctatgctttttattaaa |
38 |
Q |
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| T |
4098824 |
tttatttttccaaaaatacccctatgctttttattaaa |
4098787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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