View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16144_low_5 (Length: 371)
Name: NF16144_low_5
Description: NF16144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16144_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 3 - 353
Target Start/End: Original strand, 18351078 - 18351428
Alignment:
| Q |
3 |
gttttatacacattaattttatgtcatagaaatttacttggacaatacttgtgttattgtagtggagagaatggtgaaattggtattgggattcgtcgag |
102 |
Q |
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| T |
18351078 |
gttttgtacacattaattttatgtcatagaaatttacctggacaatacttgtgttattgtagtggagagaatggtgaaattggtattgggattcgtcgag |
18351177 |
T |
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| Q |
103 |
caatgaaacaacatagccacatatgcactaaattgtgtcaacaatcaagtcaaaacattcaacttggagcattggctgctgtagttcatgctgtttctat |
202 |
Q |
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| T |
18351178 |
caatgaaacaacatagccacatatgcactaaattgtgtcaacaatcaagtcaaaacattcaacttggagcattggcagctgtagtccatgctgtttctat |
18351277 |
T |
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| Q |
203 |
tggaagtctgttccatctccaataccacccttggtgagataccaatgattttaaaatttgaaatataaatgaacatattttttccaacattgaaaatttg |
302 |
Q |
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| T |
18351278 |
tggaagtctgttccatctccaataccacccttggtgagataccaatgattttaaaatttaaaatataaatgaacatattttttccaacattgaaaatttg |
18351377 |
T |
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| Q |
303 |
tataaatattccctttgagaatacactttttaaaaaatgttagcactaata |
353 |
Q |
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| T |
18351378 |
tataaatatgccctttgagaatacactttttaaaaaatgttagcactaata |
18351428 |
T |
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