View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16144_low_6 (Length: 336)
Name: NF16144_low_6
Description: NF16144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16144_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 30823372 - 30823062
Alignment:
| Q |
11 |
atgaacaatttatcaaatactactatgtactacgaatcgaaagctatatactatttaggctnnnnnnnntatgttaattgttaagtccgtcaagaccata |
110 |
Q |
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| T |
30823372 |
atgaacaatttatcaaatactactatgtactacgaatcgaaagctatatactatttaggctaaaaaaaatatgttaa-------gtccgtcaagaccata |
30823280 |
T |
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| Q |
111 |
tttgtttgccaacccacacctgaatctcacacgtggtgctgtcataataagaaaaggtaaattcgtcgtgatcattcgtttaattataggtcgtggacta |
210 |
Q |
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| T |
30823279 |
tttgtttgccaacccacacctgaatctcacacgtggtgctgtcataataagaaaaggtaaattcgtcatgatcattcgtttaattataggtcgtggacta |
30823180 |
T |
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| Q |
211 |
gactactacactagtttct-------ttttgagaaggactactctagtttcttaattagcaaaatactaaaagcatttagtctaaatttagataaacttt |
303 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
30823179 |
gactactacactagtttcttttttctttttgagaaggactactctagtttcttaattagcaaaatactaaacgcatttagtctaaatttagatcaacttt |
30823080 |
T |
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| Q |
304 |
atgtacgtttttgtttat |
321 |
Q |
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|||||||||||||||||| |
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| T |
30823079 |
atgtacgtttttgtttat |
30823062 |
T |
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