View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16144_low_7 (Length: 264)

Name: NF16144_low_7
Description: NF16144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16144_low_7
NF16144_low_7
[»] chr8 (4 HSPs)
chr8 (56-243)||(27513835-27514020)
chr8 (80-226)||(8674890-8675040)
chr8 (1-46)||(27513762-27513807)
chr8 (3-46)||(8675102-8675145)
[»] chr1 (4 HSPs)
chr1 (15-151)||(39209906-39210040)
chr1 (178-255)||(39209834-39209911)
chr1 (80-223)||(24037047-24037194)
chr1 (4-45)||(24036937-24036978)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 27513835 - 27514020
Alignment:
Q  56 tcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtt 155  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||| |||    
T  27513835 tcaaaacaacaacagccattcagtgagagagag--aacctcttcaccgagctcgatagctctttcaatagtagcatcgtgagctttcgacttagcatgtt 27513932  T
Q  156 tctaaaacttcttttgaagagtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatt 243  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||    
T  27513933 tctaaaacttcttctgacgagtttagcatgaatttcagatcgtttttctttgttcttactcatcggaggacggagcggttccttcatt 27514020  T

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Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 226
Target Start/End: Complemental strand, 8675040 - 8674890
Alignment:
Q  80 gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga 175  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||| || |||||||| ||||| | || |||||| |||     ||    
T  8675040 gagagagagtgaacctcttcaccgagctcgatagctcttttaacagcagcatcacgagcattagacttagcgcgtttttcaagcttcttctgatgcttga 8674941  T
Q  176 gtttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggac 226  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  8674940 gtttagcatgaatttcagatcgtttttctttgttcttaatcattgaaggac 8674890  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27513762 - 27513807
Alignment:
Q  1 aggtcttcggcaccttcttctctggaagctacaacaacacagaaat 46  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  27513762 aggtcttcggcaccttcttctctggaagctacgacaacacagaaat 27513807  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 8675145 - 8675102
Alignment:
Q  3 gtcttcggcaccttcttctctggaagctacaacaacacagaaat 46  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  8675145 gtcttcggcaccttcttctccggaggctacaacaacacagaaat 8675102  T

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Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 39210040 - 39209906
Alignment:
Q  15 ttcttctctggaagctacaacaacacagaaatnnnnnnnnntcaaaacaacaacagccatccagtgagagagagtgaacctcttcaccgagctcgatagc 114  Q
    ||||||| ||||||||||||||||||||||||         |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  39210040 ttcttctatggaagctacaacaacacagaaataaaaaaa--tcaaaacaacaacatccattcagtgagagagagtgaacctcttcaccgagctcgatagc 39209943  T
Q  115 tctttcaataacagcatcgcgagctttcgacttagca 151  Q
    |||||||||| ||||||||||||||||||||||||||    
T  39209942 tctttcaatagcagcatcgcgagctttcgacttagca 39209906  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 39209911 - 39209834
Alignment:
Q  178 ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacagagcagttccttcatttcggtttccgtc 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39209911 ttagcatgaatttcagatcgtttttctttgttcttactcatcgaaggacggagcagttccttcatttcggtttccgtc 39209834  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 24037047 - 24037194
Alignment:
Q  80 gagagagagtgaacctcttcaccgagctcgatagctctttcaataacagcatcgcgagctttcgacttagcacgtttctaaaacttcttttga----aga 175  Q
    ||||||||| ||||||||||||||| ||||||||| |||| || | || ||||||||||||||||||||||  |||||| || |||||| |||     ||    
T  24037047 gagagagagcgaacctcttcaccgatctcgatagcgcttttaacagcaacatcgcgagctttcgacttagcgtgtttctcaagcttcttctgacgcttga 24037146  T
Q  176 gtttagcatgaatttcagatcgtttttctttgttcttactcatcgaag 223  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||    
T  24037147 gtttagcatgaatttcagatcgttttccttttttcttaatcatcgaag 24037194  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 24036937 - 24036978
Alignment:
Q  4 tcttcggcaccttcttctctggaagctacaacaacacagaaa 45  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||    
T  24036937 tcttcggcagctttttctccggaagctacaacaacacagaaa 24036978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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