View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16145_low_3 (Length: 361)

Name: NF16145_low_3
Description: NF16145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16145_low_3
NF16145_low_3
[»] chr5 (2 HSPs)
chr5 (1-348)||(39184672-39185019)
chr5 (1-207)||(8730292-8730496)
[»] chr1 (4 HSPs)
chr1 (3-218)||(42373538-42373752)
chr1 (1-334)||(17032753-17033094)
chr1 (40-222)||(19597952-19598135)
chr1 (152-220)||(41919898-41919966)
[»] chr4 (4 HSPs)
chr4 (109-226)||(16501182-16501300)
chr4 (10-212)||(46699364-46699566)
chr4 (152-220)||(30963879-30963947)
chr4 (40-95)||(12295557-12295612)
[»] chr2 (4 HSPs)
chr2 (1-207)||(25505411-25505615)
chr2 (9-212)||(22885920-22886124)
chr2 (101-227)||(31902910-31903036)
chr2 (101-256)||(39339357-39339512)
[»] chr7 (6 HSPs)
chr7 (60-220)||(37792747-37792908)
chr7 (158-220)||(38484991-38485053)
chr7 (101-256)||(47326396-47326551)
chr7 (158-227)||(3420242-3420311)
chr7 (109-212)||(12480298-12480402)
chr7 (152-220)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (21-184)||(25595054-25595217)
chr3 (47-212)||(5555991-5556158)
chr3 (101-222)||(17501759-17501880)
chr3 (111-209)||(1653452-1653550)
[»] chr8 (4 HSPs)
chr8 (73-225)||(9519052-9519205)
chr8 (158-220)||(34866640-34866702)
chr8 (133-212)||(10551752-10551832)
chr8 (152-220)||(34389590-34389658)
[»] chr6 (1 HSPs)
chr6 (109-220)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 39184672 - 39185019
Alignment:
Q  1 caacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaa 100  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39184672 caacaaagttgaaagacttcaaggaaagcggccacaacgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaa 39184771  T
Q  101 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccag 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  39184772 actacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatatataggaagacgaaacacaactacaaaacataggcaacgacgccag 39184871  T
Q  201 tttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaacaaccaaccccattaacctgcg 300  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  39184872 tttgaagcagaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacatatgtcgccggagtaaacaaccaaccccatgaacctgcg 39184971  T
Q  301 gaactgacccaatcgaagccgatctcagcaacaaaatcaccataacca 348  Q
    ||||||||| ||| ||||| |||||||||||||||||||||| |||||    
T  39184972 gaactgaccgaatggaagctgatctcagcaacaaaatcaccaaaacca 39185019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 8730496 - 8730292
Alignment:
Q  1 caacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaa 100  Q
    ||||||||||||||| |||||||| ||||  | ||| ||||||||||||   |||| ||| |||| |  ||||||||||| | |||||||||||| || |    
T  8730496 caacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatatacccaccaaccaacgatagagacaga 8730397  T
Q  101 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccag 200  Q
    ||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| ||||| |||||||||    
T  8730396 actacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgacgccag 8730299  T
Q  201 tttgaag 207  Q
    | |||||    
T  8730298 tctgaag 8730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 42373752 - 42373538
Alignment:
Q  3 acaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaac 102  Q
    ||||||||||| | ||||||||||| | || ||| ||||||||||||||||||||||||||||   |||||||||||||| |||| ||||||| ||||||    
T  42373752 acaaagttgaaggtctccaaggaaatcagcaacatcgccatagcattccgaagaagcagccacagtgaatatacccacaa-ccaaagatagagacaaaac 42373654  T
Q  103 tacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtt 202  Q
    ||||| | |||||| ||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||||||| ||||||| |||||||||| || |||    
T  42373653 tacgccgtcaaaccacctcaccaagaaaacaggcagtaacatagaacagatcgataggaagacgaaacacaacttcaaaacacgggcaacgacaccggtt 42373554  T
Q  203 tgaagcggaatcacaa 218  Q
    ||||||||||||||||    
T  42373553 tgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 17033094 - 17032753
Alignment:
Q  1 caacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag-ccaa 99  Q
    ||||||||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||||||  ||||| ||||||||  || |||||||| | ||    
T  17033094 caacaaagttgaaggtctctaaggaaagcagccacatcgccatagcattccgaagaagcagccacgttgaataaacccacaaatcagcgatagagacaaa 17032995  T
Q  100 aactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa---aacatatctataggaagacgaaacacaactac-aaaacatgggcaacgac 195  Q
    |||||| ||||||||||| |||||||||||||||  |||||||| ||    ||||||||| ||||||||||||  |||| || ||||||  || |  |||    
T  17032994 aactacactgccaaaccgtctcaccaagaaaacaagcagcaacataatatcacatatctagaggaagacgaaatccaacaacaaaaacacaggtagtgac 17032895  T
Q  196 gccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaac---aaccaaccccatt 292  Q
     || || |||||| |||||||||||   |||| | |||||  || |||||||||| |||| | || |  |||| ||||||||||   ||||||  ||||     
T  17032894 cccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgacaaggaggagacttccgtcgtcggagtaaacaaaaaccaagtccatg 17032795  T
Q  293 aacctgcggaactgacccaatcgaagccgatctcagcaacaa 334  Q
    |||||||  |||||||  |||||| ||| |||||||||||||    
T  17032794 aacctgcaaaactgactgaatcgacgccaatctcagcaacaa 17032753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 19598135 - 19597952
Alignment:
Q  40 ccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacag 138  Q
    ||||||||||| |||||| || |||| |||||||||| ||||| ||| ||| |||| ||||  ||||||  ||||||| |||| |||||||| ||| |||    
T  19598135 ccatagcattctgaagaatcaaccacaaagaatatactcacaaaccatcgaaagagacaaaggctacgcctccaaaccacctcgccaagaaa-caggcag 19598037  T
Q  139 caacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaaccta 222  Q
    |||| |||| ||| | | | ||||||| ||||| |||| ||| |||| ||||||||||||| || ||||| |||| |||||||||    
T  19598036 caacccaaacacaaaccaaaaggaagatgaaacccaacaacagaacacgggcaacgacgccggtctgaagtggaaacacaaccta 19597952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  152 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 220  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 16501300 - 16501182
Alignment:
Q  109 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 207  Q
    |||||||||||||||||||||||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| ||||||||    
T  16501300 gccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaag 16501201  T
Q  208 cggaatcacaacctaaatc 226  Q
     |||||||||||| |||||    
T  16501200 tggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 46699364 - 46699566
Alignment:
Q  10 tgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagcca-aaactacgct 108  Q
    |||||| ||| ||||||||| || ||| | ||||| ||||||||||||||||||| |  |||| ||||||||| ||| ||||| ||  | |||||||||     
T  46699364 tgaaagtctcgaaggaaagcagcaacatcaccataacattccgaagaagcagccatggtgaatttacccacaaaccagcgataaagatataaactacgcc 46699463  T
Q  109 gccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 208  Q
    |||||||| |||||||||| | |||| || ||||  || ||| ||| ||||||||| |||   |||| |||| ||| ||||| |||||||  ||||||||    
T  46699464 gccaaaccacctcaccaag-acacaggcatcaaccaaacacagatcaataggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaagc 46699562  T
Q  209 ggaa 212  Q
    ||||    
T  46699563 ggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  152 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 220  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 12295612 - 12295557
Alignment:
Q  40 ccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 95  Q
    ||||||||||| |||||||||||||||  |||||||||||||| ||| | ||||||    
T  12295612 ccatagcattctgaagaagcagccacggtgaatatacccacaaaccatcaatagag 12295557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 25505411 - 25505615
Alignment:
Q  1 caacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaa 100  Q
    ||||||||||||||| |||||||| ||||  | ||| ||||||||||||   |||| ||| |||| |  ||||||||||| | |||||||||||| || |    
T  25505411 caacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatatacccaccaaccaacgatagagacaga 25505510  T
Q  101 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccag 200  Q
    ||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| ||||| |||||||||    
T  25505511 actacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgacgccag 25505608  T
Q  201 tttgaag 207  Q
    | |||||    
T  25505609 tctgaag 25505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 22885920 - 22886124
Alignment:
Q  9 ttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagcca-aaactacgc 107  Q
    ||||||| ||| ||||||||| |  ||| |||| ||||||| ||||||||||||||| | |||||||||||||| | |  |||||||  | |||| ||||    
T  22885920 ttgaaagtctctaaggaaagcaggaacatcgccttagcatttcgaagaagcagccacaacgaatatacccacaaactagtgatagagatagaaaccacgc 22886019  T
Q  108 tgccaaaccgcctcaccaagaaaacagacagcaacaca-aaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaa 206  Q
     |||||||| |||||||||| |||||  ||||||||||   ||||||| | ||||||| ||||| |||| |||||||| ||  | |||||||||| ||||    
T  22886020 cgccaaaccacctcaccaag-aaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcgacgccagtctgaa 22886118  T
Q  207 gcggaa 212  Q
    ||||||    
T  22886119 gcggaa 22886124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 31902910 - 31903036
Alignment:
Q  101 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 199  Q
    ||||||| ||||||  |||||| ||||||| || |||||||||| || | | ||||| ||||||||||||| |||| |||||||| ||||| |||||||     
T  31902910 actacgccgccaaatagcctcagcaagaaa-caaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccg 31903008  T
Q  200 gtttgaagcggaatcacaacctaaatca 227  Q
    ||||||||||||| ||||||||| ||||    
T  31903009 gtttgaagcggaaacacaacctagatca 31903036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 39339357 - 39339512
Alignment:
Q  101 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 199  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| |     
T  39339357 actacgccgccaaacatcctcaccaagaaa-cagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcg 39339455  T
Q  200 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 256  Q
    |||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  39339456 gtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggaga 39339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 60 - 220
Target Start/End: Complemental strand, 37792908 - 37792747
Alignment:
Q  60 agccacgaagaatatacccacaagccaacgatagagcca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctat 157  Q
    |||||||| ||||| |||||||| ||||||| |||| || ||||||||| ||||||||  |  ||||||||| |||||||||||||||| ||  ||| |     
T  37792908 agccacgatgaataaacccacaaaccaacgacagagacagaaactacgccgccaaaccagccaaccaagaaa-cagacagcaacacaaacacggatcaag 37792810  T
Q  158 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 220  Q
    || |||| ||||| ||||  ||||||| || |||||||||| ||||||||||||| |||||||    
T  37792809 agaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacc 37792747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  158 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 220  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 256
Target Start/End: Original strand, 47326396 - 47326551
Alignment:
Q  101 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 199  Q
    ||||||| |||||||  |||||||||| |||||  |||||||||||| |   ||||| ||||||| ||||  |||| |||||||| ||||| |||| ||     
T  47326396 actacgccgccaaacatcctcaccaag-aaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccg 47326494  T
Q  200 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 256  Q
     ||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  47326495 atttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  158 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 227  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 12480402 - 12480298
Alignment:
Q  109 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac-gaaacacaactacaaaacatgggcaacgacgccagtttgaa 206  Q
    |||||||||||||||||||||||||||  || ||||||| ||| ||| | |||||||| ||||  |||| |||||||| | ||| ||||||| |||||||    
T  12480402 gccaaaccgcctcaccaagaaaacagatggccacacaaatacagatc-agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaa 12480304  T
Q  207 gcggaa 212  Q
    | ||||    
T  12480303 gtggaa 12480298  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  152 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 220  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 25595054 - 25595217
Alignment:
Q  21 aaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcct 120  Q
    ||||||||| || ||| |||||| || |||| || | |||||||||   || ||||||| || | | |||||||| | |||||||| |||||||||||||    
T  25595054 aaggaaagcagcaacatcgccattgccttccaaaaatgcagccacggttaaaatacccataaacgagcgatagagacgaaactacgttgccaaaccgcct 25595153  T
Q  121 caccaagaaaacagacagcaacac-aaaacatatctataggaagacgaaacacaactacaaaaca 184  Q
    ||||||| |||||  ||||||||| |||||| ||||| |||| ||||||||| ||| ||||||||    
T  25595154 caccaag-aaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaaca 25595217  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 5556158 - 5555991
Alignment:
Q  47 attccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa 146  Q
    |||||||||||||| |||    |||||||||||||| ||| ||| |||| |||||| | || ||| ||||||| ||||| |||||||  |||||||||||    
T  5556158 attccgaagaagcaaccatagtgaatatacccacaaaccagcgacagagacaaaacaatgcagcctaaccgccacaccatgaaaacaagcagcaacacaa 5556059  T
Q  147 a-acatatcta-taggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 212  Q
    | ||||||||| |  ||||||||| | |||| | | |||| ||||| ||||||| || ||||||||||    
T  5556058 acacatatctattttgaagacgaagcccaacaaaagaacacgggcagcgacgccggtctgaagcggaa 5555991  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 17501759 - 17501880
Alignment:
Q  101 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 199  Q
    |||||||||||||||  ||||||||| |||| ||  ||||||||||| | | ||||| ||||||||||||   ||| |||||||| || ||| |||| ||    
T  17501759 actacgctgccaaacatcctcaccaa-aaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtca 17501857  T
Q  200 gtttgaagcggaatcacaaccta 222  Q
    ||||||||||||| |||||||||    
T  17501858 gtttgaagcggaaacacaaccta 17501880  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 1653452 - 1653550
Alignment:
Q  111 caaaccgcctcaccaagaaaacagacagcaacacaaaacatatctat--aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 208  Q
    |||||| |||||| |||||| ||| |||||||||||| ||||  |||  ||||||||||||  |||| |||||||| ||||| ||||||| |||||||||    
T  1653452 caaacctcctcacgaagaaa-caggcagcaacacaaa-cataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagc 1653549  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 9519205 - 9519052
Alignment:
Q  73 atacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaac 170  Q
    |||||||||| ||| |||||| | ||||| |||| | ||||| || |||||||| ||||||| ||||||| ||||| ||| ||||| || ||||||||||    
T  9519205 atacccacaaaccagcgatagggacaaaaactacaccgccaacccacctcaccatgaaaaca-acagcaatacaaacacaaatctagagaaagacgaaac 9519107  T
Q  171 acaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 225  Q
     |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519106 ccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  158 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 220  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 212
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  133 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 212  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  152 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 220  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 12793664 - 12793553
Alignment:
Q  109 gccaaaccgcctcaccaagaaaacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 207  Q
    |||||||  ||||||||||||| ||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| ||||||||||||||||||||||    
T  12793664 gccaaacaccctcaccaagaaa-cagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaag 12793566  T
Q  208 cggaatcacaacc 220  Q
    || || |||||||    
T  12793565 cgaaaacacaacc 12793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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