View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16145_low_4 (Length: 323)
Name: NF16145_low_4
Description: NF16145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16145_low_4 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 31320147 - 31320430
Alignment:
| Q |
18 |
aaaagaatggtcagatgaacacaaacttcccctctttgaaagcttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaaagaaaat |
117 |
Q |
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| T |
31320147 |
aaaagaatggtcagatgaacacaaacttcccctctttgaaaccttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaatgaaaat |
31320246 |
T |
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| Q |
118 |
tgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcatt |
217 |
Q |
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| T |
31320247 |
tgtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcatt |
31320346 |
T |
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| Q |
218 |
attgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaag |
301 |
Q |
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| T |
31320347 |
attgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaag |
31320430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 31332401 - 31332683
Alignment:
| Q |
19 |
aaagaatggtcagatgaacacaaacttcccctctttgaaagcttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaaagaaaatt |
118 |
Q |
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| T |
31332401 |
aaagaatggtcagagaaacacaaactttcactctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaatt |
31332500 |
T |
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| Q |
119 |
gtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcatta |
218 |
Q |
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| T |
31332501 |
gtacacaagaaggattccaaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcatta |
31332600 |
T |
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| Q |
219 |
ttgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaag |
301 |
Q |
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| T |
31332601 |
ttgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaag |
31332683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 3522 - 3240
Alignment:
| Q |
19 |
aaagaatggtcagatgaacacaaacttcccctctttgaaagcttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaaagaaaatt |
118 |
Q |
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| T |
3522 |
aaagaatggtcagagaaacacaaactttcactctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaatt |
3423 |
T |
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| Q |
119 |
gtacacaagaaggattccaaaatcaagtattaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcatta |
218 |
Q |
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| T |
3422 |
gtacacaagaaggattccaaaatcaagtattaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcatta |
3323 |
T |
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| Q |
219 |
ttgtggttcatgtggttatggttgtccaaaaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaag |
301 |
Q |
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| T |
3322 |
ttgtggttcatgtggttatggttgtccaaagggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaag |
3240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 33522105 - 33522023
Alignment:
| Q |
179 |
aagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaaaaggtgagaaacaa |
261 |
Q |
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| T |
33522105 |
aagtcgattatgtgccgagaaattcatcagagcatcattactgtggttcttgtaactatggttgtacaaaaggagataaacaa |
33522023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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