View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16146_high_1 (Length: 720)

Name: NF16146_high_1
Description: NF16146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16146_high_1
NF16146_high_1
[»] chr4 (1 HSPs)
chr4 (11-706)||(53680888-53681573)


Alignment Details
Target: chr4 (Bit Score: 619; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 11 - 706
Target Start/End: Complemental strand, 53681573 - 53680888
Alignment:
Q  11 cacagactaacttgtgaagctgatcaaattgcaacaaggatcgatgagtacacaaaatttgagtcaagtgtttttgtgctgctagtatttaattatcaga 110  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53681573 cacagactaacttgtgaagctgatcaaattgcaacaaggat----gagtacacaaaatttgagtcaagtgtttttgtgctgctagtatttaattatcaga 53681478  T
Q  111 tagaagggatttgtttttgcagtcatcaactattatagaaatgaatatggttccatcaatactttgatgatgattccgcatccctcttatggttagtact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53681477 tagaagggatttgtttttgcagtcatcaactattatagaaatgaatatggttccatcaatactttgatgatgattccgcatccctcttatggttagtact 53681378  T
Q  211 agtactatttgaaaatttcattagatttatgtcaccattttcttttgagatatttccttgttgaacttgaaatttcttgataccaaaataagccaaggaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53681377 agtactatttgaaaatttcattagatttatgtcaccattttcttttgagatatttccttgttgaacttgaaatttcttgataccaaaataagccaaggaa 53681278  T
Q  311 tcacacacatttgttcactcaaattgcatgtgaatatgaatatgaatatacttatgtttggaaatgtggtggcagactaattattgcgttccattgaaat 410  Q
    |||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  53681277 tcacacacatttgttcactcaaattgcatgtgaatatga------atatacttatgtttggaaatgtggtggcagactaattatcgcgttccattgaaat 53681184  T
Q  411 tttcaccgtgaaaaccagaagctccaatttgtagcttcagcttcaccgtaaaattgtctagctgcaccacatttccaaacacataccaagtctagggtgg 510  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53681183 tttcaccatgaaaaccagaagctccaatttgtagcttcagcttcaccgtgaaattgtctagctgcaccacatttccaaacacataccaagtctagggtgg 53681084  T
Q  511 ccactacnnnnnnnataggaaaaacttaacattcactaatattaatatagaagggggaatggatcaaagacacaagttgaaccagtaatcaaacccaaga 610  Q
    |||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53681083 ccactactttttttataagaaaaacttaacattcactaatattaatatagaagggggaatggatcaaagacacaagttgaaccagtaatcaaacccaaga 53680984  T
Q  611 gttacaagacaaaatgatgcaatcatccaaaaggtttggcttacaagggcatttaccatatcttaataaataagtaaaattaccaaaaacatgtaa 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53680983 gttacaagacaaaatgatgcaatcatccaaaaggtttggcttacaagggcatttaccatatcttaataaataagtaaaattaccaaaaacatgtaa 53680888  T

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