View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16146_high_13 (Length: 253)
Name: NF16146_high_13
Description: NF16146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16146_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 10210545 - 10210316
Alignment:
| Q |
11 |
cagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctctgtggtgtat--- |
107 |
Q |
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| T |
10210545 |
cagagagatattaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacaactagatgtatcaaaattgctctgtggtgtatcct |
10210446 |
T |
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| Q |
108 |
cctcttagatgtaagacagatttaatctcggcattttgttaagcaagggtatattaaacatgagaaaggcatcgacaaatgttaa-nnnnnnnnaacaga |
206 |
Q |
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| T |
10210445 |
cctcttagatgtaagacagatttaatctcggcattttgttaagcaagggtatattaaacattagaaaggcatcgacaaatgttaatttttttttaacgga |
10210346 |
T |
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| Q |
207 |
atgaaatgaaatgtcaatggtgttaacctt |
236 |
Q |
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| T |
10210345 |
atgaaatgaaatgtcaatggtgttaacctt |
10210316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 10216333 - 10216171
Alignment:
| Q |
16 |
agatattaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctctgtggtgtatcctcttag |
115 |
Q |
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| T |
10216333 |
agatattaaaggaatggtggctaagggaatatgcatcacaaggtccaggagtttcatacagccagatgtatc-aaattgctctgtggtgtatcctcttag |
10216235 |
T |
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| Q |
116 |
atgtaagacagatttaatctcggcattttgttaagcaagggtatattaaacatgagaaaggcat |
179 |
Q |
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| T |
10216234 |
atgtaagacaaattaaattaatgcattttgttaagcaggggtatattaaacatgagaaaggcat |
10216171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 9683149 - 9683004
Alignment:
| Q |
20 |
attaaaggaatggtggctaagggaatatgcatcaccaggtccaggagtttcatacagccagatgtatcaaaattgctctgtggtgtatcctcttagatgt |
119 |
Q |
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| T |
9683149 |
attaaaggaatggttgctaggggaatatgcatcacaagg------agttccataaagccagatgtatcaaa-ttgctctgtggtttatcctcctagatgt |
9683057 |
T |
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| Q |
120 |
aagacagatttaatctcggcattttgttaagcaagggtatattaaacatgaga |
172 |
Q |
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|||| || ||||||||| |||||||||||| |||||| ||||||||||||||| |
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| T |
9683056 |
aagaaagttttaatctctgcattttgttaatcaagggcatattaaacatgaga |
9683004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 10108667 - 10108764
Alignment:
| Q |
95 |
ctctgtggtgtatcctcttagatgtaagacagatttaatctcggcattttgttaagcaagggtatattaaacatgagaaaggcatcgacaaatgttaa |
192 |
Q |
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| T |
10108667 |
ctctgtggtgtatcctcttagatgtaagacagattaaatctctgcattttcttaagcaggggcatattaaacatgagaaaggcatcaacacatgttaa |
10108764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 9675208 - 9675108
Alignment:
| Q |
78 |
cagatgtatcaaaattgctctgtggtgtatcctcttagatgtaagacagatttaatctcggcattttgttaag---caagggtatattaaacatgagaaa |
174 |
Q |
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||||||||||||| ||||| |||||||||||||| || |||||| |||||||||||||| ||||||||||||| || ||| ||||||||||||||||| |
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| T |
9675208 |
cagatgtatcaaa-ttgctatgtggtgtatcctcctaaatgtaaaacagatttaatctctgcattttgttaagcatcaggggcatattaaacatgagaaa |
9675110 |
T |
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| Q |
175 |
gg |
176 |
Q |
| |
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|| |
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|
| T |
9675109 |
gg |
9675108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 10108616 - 10108665
Alignment:
| Q |
11 |
cagagagatattaaa-ggaatggtggctaagggaatatgcatcaccaggt |
59 |
Q |
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| T |
10108616 |
cagagagatattaaaaggaatggtggctaagggaatatgcatcacaaggt |
10108665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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