View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16146_high_14 (Length: 235)
Name: NF16146_high_14
Description: NF16146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16146_high_14 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 23625786 - 23626021
Alignment:
| Q |
1 |
aaatatattccattaagattggattgccaatcannnnnnnaggattcttaacttgaccgctttcctgaaaagtatatataaatcacttgttcttgacaaa |
100 |
Q |
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| T |
23625786 |
aaatatattccattaagattggattgccaatcatttttttaggattcttaacttgaccgctttcctgaaaagtatatataaatcacttgttcttgacaaa |
23625885 |
T |
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| Q |
101 |
ttgtcacattcaatatgcaggcttatactgaaatttatc-nnnnnnncgatcagaatagataccaacatatgcagagccacaaggatgcaccaccctgta |
199 |
Q |
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| T |
23625886 |
ttgtcacattcaatatgcaggcttatactgaaatttatcttttttttcgatcagaatagataccaacatatgcagagccacaaggatgcaccaccctgta |
23625985 |
T |
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| Q |
200 |
atgagattatctagcttcatggaaacacttaattcc |
235 |
Q |
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| T |
23625986 |
atgagattatctagcttcatggatacacttaattcc |
23626021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 23615046 - 23615244
Alignment:
| Q |
42 |
ggattcttaacttgaccgctttcctgaaaagtatatataaatcacttgttcttgacaaattgtcacattcaa------tatgcaggcttatactgaaatt |
135 |
Q |
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| T |
23615046 |
ggattcttaacttgaccgctttcctgaaaagtataaaga--tcacttgttcttgacaaaatgtcacattcaaattcaatatgtaggcttatactgaaatt |
23615143 |
T |
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| Q |
136 |
tatcnnnnnnncg-atcagaatagataccaacatatgcagagccacaaggatgcaccaccctgtaatgagattatctagcttcatggaaacacttaattc |
234 |
Q |
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| T |
23615144 |
tttctttttttgggatcagaatagatactagcagatgcagagccacaaggatgcaccaccctgcaatgagattatctagcttcatggaaacacttaattc |
23615243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 229
Target Start/End: Original strand, 23607671 - 23607855
Alignment:
| Q |
43 |
gattcttaacttgaccgctttcctgaaaagtatatataaatcacttgttcttgacaaattgtcacattcaatatgcaggcttatactgaaatttatcnnn |
142 |
Q |
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| T |
23607671 |
gattcttaacttgaccgctttcctgaaaag--tatatagatcacttgttccggacaaaatgtcacattcaatatgtaggcttatcctaaaatttgtattt |
23607768 |
T |
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| Q |
143 |
nnnncgatcagaatagataccaacatatgcagagccacaaggatgcaccaccctgtaatgagattatctagcttcatggaaacactt |
229 |
Q |
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| T |
23607769 |
tttccgatcggaatagataccagcagatgcagagccacaaggctgcaccaccatgaaatgagattacctagcttcatggaaacactt |
23607855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 229
Target Start/End: Original strand, 23578870 - 23579055
Alignment:
| Q |
43 |
gattcttaacttgaccgctttcctgaaaagtatatataaatcacttgttcttgacaaa--ttgtcacattcaatatgcaggcttatactgaaatttatcn |
140 |
Q |
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| T |
23578870 |
gattcttaacttgaccgctttccagaaaag--tatatagatcacttgttcttgataaaacgtggcatattcaatatgcaggcttatactaaaatttgtct |
23578967 |
T |
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| Q |
141 |
nnnnnncgatcagaatagataccaacatatgcagagccacaaggatgcaccaccctgtaatgagattatctagcttcatggaaacactt |
229 |
Q |
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| T |
23578968 |
ttttttcaattagaatagataccaggagatgcagagccacaagg-cacgccaccctgcaagtagattacctggcttcatgggaacactt |
23579055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 23585114 - 23585189
Alignment:
| Q |
43 |
gattcttaacttgaccgctttcctgaaaag--tatatataaatcacttgttcttgacaaattgtcacattcaatat |
116 |
Q |
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| T |
23585114 |
gattcttaacttgaccactttcttgaaaagtatatatatagattacctgttcttgacaaaatgtcacattcaatat |
23585189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 134
Target Start/End: Original strand, 23619960 - 23620049
Alignment:
| Q |
43 |
gattcttaacttgaccgctttcctgaaaagtatatataaatcacttgttcttgacaaattgtcacattcaatatgcaggcttatactgaaat |
134 |
Q |
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| T |
23619960 |
gattcttcacttgactgctttcctgaaaag--tatatagatcacttgttcctaacaaaatgtctcaatcaatatgtaggcttatactaaaat |
23620049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 23585211 - 23585292
Alignment:
| Q |
148 |
gatcagaatagataccaacatatgcagagccacaaggatgcaccaccctgtaatgagattatctagcttcatggaaacactt |
229 |
Q |
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| T |
23585211 |
gatcagaatagatactagcagatgtagagccacaaggcagcaccacccagcatttagattacttagcttcatggaaacactt |
23585292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 23620067 - 23620121
Alignment:
| Q |
147 |
cgatcagaatagataccaacatatgcagagccacaaggatgcaccaccctgtaat |
201 |
Q |
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| T |
23620067 |
cgatcagaatagataccattagatgcagagccacaaagctgcaccaccatgtaat |
23620121 |
T |
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