View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16146_high_2 (Length: 611)
Name: NF16146_high_2
Description: NF16146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16146_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 27 - 375
Target Start/End: Complemental strand, 28630618 - 28630270
Alignment:
| Q |
27 |
tcttagcttttgttattctttctcaacacacctaaaagcctcaatttgtaatttgctttaggcctacaaatatcttaggccaaccatgacaagcatcata |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28630618 |
tcttagcttttgttattctttctcaacacacctaaaagcctcaatttgtaatttgctttatgcctacaaatatcttaggccagccatgacaagcatcata |
28630519 |
T |
|
| Q |
127 |
tacacatcaagtcaacaagtattgtaaaagactaagttacacatgcaacaatatcaataatattgtagctctacaatacaagcatatgatgattaatgta |
226 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28630518 |
tacacatcaagtcaacaagtattataaaagactaagttacacatgcaacaatatcaataatattgtagctctacaatacaagcatatgatgattaatgta |
28630419 |
T |
|
| Q |
227 |
tttccaaactattaatctaaacatatggccaagtataaaactacatatgacaattatactatttacaaactaggtgaatcaacagcaaacctcacaactg |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28630418 |
tttccaaactattaatctaaacatatggccaagtatataactacatatgacaattatactatttacaaactaggtgaatcaacagcaaacctcacaactg |
28630319 |
T |
|
| Q |
327 |
atccaagctcatcccaattatcaaatggtaacaactcattagcatcctc |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28630318 |
atccaagctcatcccaattatcaaatggtaacaactcattagcatcctc |
28630270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 406 - 603
Target Start/End: Complemental strand, 28630260 - 28630063
Alignment:
| Q |
406 |
attgtttccatgaaactgattgctttggtcactgcttgtatagttattgactggtttgtcctcatgaacgtgatgatgttcatggcttgcaccgaaattg |
505 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28630260 |
attgcttccatgaaactgattgctttggtcactgcttgtatagttattgactggtttgtcctcatgaacgtgatgatgttcatggcttgcaccgaaattg |
28630161 |
T |
|
| Q |
506 |
atatatgtttgttgatttatgttgaactcgatattgttgtccattctggtgctcgtgttatgaacggattgacgtttgttggctaattgtttcatctc |
603 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28630160 |
atatatgtttgttgatttatgttgaactccatattgttgtccattctggtgctcgtgttatgaacggattgaagtttgttggctaattgtttcatctc |
28630063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 283 - 408
Target Start/End: Complemental strand, 28616068 - 28615943
Alignment:
| Q |
283 |
tactatttacaaactaggtgaatcaacagcaaacctcacaactgatccaagctcatcccaattatcaaatggtaacaactcattagcatcctccttaatc |
382 |
Q |
| |
|
||||||||||| |||||||||||| | |||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| | | ||||||| |
|
|
| T |
28616068 |
tactatttacatactaggtgaatctgaaacaaaattcacaactgatccaagctcatcccaattatcaaatgataataactcattagcagcttgcttaatc |
28615969 |
T |
|
| Q |
383 |
caaaaatttgatgatggtgttacatt |
408 |
Q |
| |
|
||||||||||| ||| |||||||||| |
|
|
| T |
28615968 |
caaaaatttgaagattgtgttacatt |
28615943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 28615812 - 28615771
Alignment:
| Q |
500 |
aaattgatatatgtttgttgatttatgttgaactcgatattg |
541 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |||||| |
|
|
| T |
28615812 |
aaattgatatatgtttgttgatttgtgttcaactccatattg |
28615771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University