View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16146_low_10 (Length: 304)
Name: NF16146_low_10
Description: NF16146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16146_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 289
Target Start/End: Original strand, 8947854 - 8948139
Alignment:
| Q |
3 |
caaaggaagaaggaagaggatttttgaaaatcaaactgtatgaaagatgattttgtcatttcgtgttgtaaccaggaatatacaaggcgcaattagaaga |
102 |
Q |
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| T |
8947854 |
caaaggaagaaggaagaggctttttgaaaatcaaactatatgaaagataattttgtcatttcggagtgtaaccaggaatatacaaggtgcaattagaa-a |
8947952 |
T |
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| Q |
103 |
aaaagtctaaaaagaactacatatataacctcaaaaatatattaaaacttgagtaatgatgtttgtacaattatttgcaacgatgtcagggttgaaagta |
202 |
Q |
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| T |
8947953 |
aaaagtctaaaaagaactacatatataacctcgaaaatatattaaaacttgagtaatgatgtttgtacaattatttgcaacgatgtcagggttgaaagta |
8948052 |
T |
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| Q |
203 |
aattttcataaaagtgcgctggtgggtatcaatgttcctcattcttggttacgtgaggctgcaaatgttttgaactgtaaaattggt |
289 |
Q |
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| T |
8948053 |
aattttcataaaagtgcgctggtgggtatcaatgttcctcattcttggttacgtgaggctgcaaatgttttgaactgtaaaattggt |
8948139 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 289
Target Start/End: Complemental strand, 24574167 - 24574072
Alignment:
| Q |
194 |
ttgaaagtaaattttcataaaagtgcgctggtgggtatcaatgttcctcattcttggttacgtgaggctgcaaatgttttgaactgtaaaattggt |
289 |
Q |
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| T |
24574167 |
ttgaaagttaacttccataaaagtgagttggtgggtattaatcttcctgaatcttggttactagaggctgcagatgtcttaaattgtaaaattggt |
24574072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 7081070 - 7080992
Alignment:
| Q |
9 |
aagaaggaagaggatttttgaaaatcaaactgtat-gaaagatgattttgtcatttcgtgttgtaaccaggaatataca |
86 |
Q |
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| T |
7081070 |
aagaaggaagaggctttttgaaaatcaaattttatctaaggataattttatcattttggggtgtaaccaggaatataca |
7080992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 24897080 - 24896991
Alignment:
| Q |
12 |
aaggaagaggatttttgaaaatcaaactgtatgaaaga-tgattttgtcatttcgtgttgtaaccaggaatatacaaggcgcaattagaa |
100 |
Q |
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| T |
24897080 |
aaggaagaggctttttgaaacttaaattttatgaaagagtaattttgtcattttggggtgtaaccaggattaaacaaggtgtaattagaa |
24896991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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