View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16146_low_11 (Length: 285)
Name: NF16146_low_11
Description: NF16146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16146_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 23626341 - 23626084
Alignment:
| Q |
17 |
ccatagacctaatggattaagttgttcggtagagatgtgatgttaaggcgtcttaacatccttgacggtttagtcgatttccgctcctcgaactctacat |
116 |
Q |
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| T |
23626341 |
ccataaacctaatggattaagttgttcggtagagatgtgatgttaaggcgtcttaacatccttgacggtttagtcgatttccgctcctcgaactctacat |
23626242 |
T |
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| Q |
117 |
caagtactatcacaaacgatgcttattaatgtgaccgacacctagtgttgaaagtgttcctaaaatggtcctcctgcctgcggtgataattatgggcttg |
216 |
Q |
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| T |
23626241 |
caagtactatcacaaacgatgcttattaatgtgaccgacacctagtgttgaaagtgttcctaaaatggtcctcctgcctgcggtgataattatgggcttg |
23626142 |
T |
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| Q |
217 |
tcctcaacaaattgagatattctataccattcaaataaacttcaagaataacgctctc |
274 |
Q |
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| T |
23626141 |
tcctcaacaaattgagatattctataccattcaaataaacttcaagaataacgctctc |
23626084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 23615403 - 23615308
Alignment:
| Q |
178 |
aaaatggtcctcctgcctgcggtgataattatgggcttgtcctcaacaaattgagatattctataccattcaaataaacttcaagaataacgctct |
273 |
Q |
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| T |
23615403 |
aaaatggccctcctcccgaccgtgacaattatgggcttgtcctcaacaaattgagatattctataccgttcaaataaacttcaagaataacactct |
23615308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 23616859 - 23616740
Alignment:
| Q |
49 |
agatgtgatgttaaggcgtcttaacatccttgacggtttagtcgatttccgctcctcgaactctacatcaagtactatcacaaacgatgcttattaatgt |
148 |
Q |
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| T |
23616859 |
agatgtggtgttaaggcgtcttaacattcttgaaggtttatccaattgccgctccctgaactcaacaacaagtagtatcacaaccgttgcttattaaagt |
23616760 |
T |
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| Q |
149 |
gaccgacacctagtgttgaa |
168 |
Q |
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|||| |||||| |||||||| |
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| T |
23616759 |
gaccaacacctcgtgttgaa |
23616740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 23579195 - 23579135
Alignment:
| Q |
204 |
aattatgggcttgtcctcaacaaattgagatattctataccattcaaataaacttcaagaa |
264 |
Q |
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| T |
23579195 |
aattatgggcttgtcctcaaccaataaagatattctctaccattcaaataaacttcaagaa |
23579135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 23607981 - 23607930
Alignment:
| Q |
216 |
gtcctcaacaaattgagatattctataccattcaaataaacttcaagaataa |
267 |
Q |
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| T |
23607981 |
gtcctcaacaaattgagatattctataccattcaaataaccatcaagaataa |
23607930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 23620228 - 23620178
Alignment:
| Q |
204 |
aattatgggcttgtcctcaacaaattgagatattctataccattcaaataa |
254 |
Q |
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| T |
23620228 |
aattatgggcttgtcctcaacaaattgagatattctatgccgttcaaataa |
23620178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 23574126 - 23574060
Alignment:
| Q |
178 |
aaaatggtcctcctgcctgcggtgataattatgggcttgtcctcaacaaattgagatattctatacc |
244 |
Q |
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| T |
23574126 |
aaaatggtcctcctatatgcggttacaattatggggttgtcctaaacaaattgagatattctatacc |
23574060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 23601838 - 23601774
Alignment:
| Q |
178 |
aaaatggtcctcctgcctgcggtgataattatgggcttgtcctcaacaaattgagatattctata |
242 |
Q |
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|||||||||||||| |||||| | ||||||||| ||||||| ||||||||||||||||||||| |
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| T |
23601838 |
aaaatggtcctcctatgtgcggttacaattatggggttgtcctaaacaaattgagatattctata |
23601774 |
T |
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