View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16146_low_17 (Length: 226)

Name: NF16146_low_17
Description: NF16146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16146_low_17
NF16146_low_17
[»] chr8 (2 HSPs)
chr8 (58-226)||(13214049-13214217)
chr8 (10-45)||(13214233-13214268)


Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 58 - 226
Target Start/End: Complemental strand, 13214217 - 13214049
Alignment:
Q  58 tttgtgaagaaggtttgaacatttttaagtaggaagaaagtgatcttttgcacgggatatagctgaactttgaagcataccaattctaggaaccatcaga 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13214217 tttgtgaagaaggtttgaacatttttaagtaggaagaaagtgatcttttgcacgggatatagctgaactttgaagcataccaattctaggaaccatcaga 13214118  T
Q  158 ggaagcaataatgagttccaaagacatagagatagaggtggttgtctgaaaagaaggtgcatatagctg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13214117 ggaagcaataatgagttccaaagacatagagatagaggtggttgtctgaaaagaaggtgcatatagctg 13214049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 13214268 - 13214233
Alignment:
Q  10 attatactaaaaacacaggaaggtttgatcattaag 45  Q
    |||||||||||||||||||||||||||| |||||||    
T  13214268 attatactaaaaacacaggaaggtttgaacattaag 13214233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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