View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16146_low_4 (Length: 450)
Name: NF16146_low_4
Description: NF16146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16146_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 277 - 436
Target Start/End: Complemental strand, 45105270 - 45105111
Alignment:
| Q |
277 |
gtaaacggtggacatttactatttctagtaacagtacgatttacttaaacttttaaatatcatatttatacattaaaatatggtaatccgatataacatc |
376 |
Q |
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| T |
45105270 |
gtaaacggtagacttttactatttctagtaacagtacgatttacttaaacttttaaatatcatatttatacattaaaatatggtaatccgatataacatc |
45105171 |
T |
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| Q |
377 |
aattttaattaactcatcnnnnnnnnnctctatgtatgtttggcatggatggtagtatat |
436 |
Q |
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| T |
45105170 |
aattttaattaactcatctttttttttctctatgtatgtaaggcatggatggtagtatat |
45105111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 45105544 - 45105476
Alignment:
| Q |
12 |
aagaagtcaatatcacatatacccaaaagtaaatatattgttttttcttatcatcatgttattgtaaca |
80 |
Q |
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| T |
45105544 |
aagaagtcaatatcacatatacccaaaagtaaatatattgttttttcttatcatcatgttatcgtaaca |
45105476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 45105400 - 45105339
Alignment:
| Q |
150 |
aaacttgttcacaatttcatctaagtttgacgttggtttgcttctcgtcttagtgcaccatt |
211 |
Q |
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| T |
45105400 |
aaacttgttcacaatttcatctaagtttgacgttggttttcttctcgtcttagtgcaccatt |
45105339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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