View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16146_low_6 (Length: 339)

Name: NF16146_low_6
Description: NF16146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16146_low_6
NF16146_low_6
[»] chr4 (2 HSPs)
chr4 (1-294)||(27908175-27908467)
chr4 (5-98)||(31306589-31306682)
[»] chr5 (1 HSPs)
chr5 (4-106)||(40493082-40493184)
[»] chr8 (3 HSPs)
chr8 (5-100)||(33772936-33773031)
chr8 (3-100)||(36459855-36459952)
chr8 (66-100)||(33775031-33775065)
[»] chr7 (1 HSPs)
chr7 (7-92)||(42609683-42609768)
[»] chr1 (1 HSPs)
chr1 (7-95)||(25948399-25948487)
[»] chr3 (1 HSPs)
chr3 (7-100)||(42075576-42075669)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 27908175 - 27908467
Alignment:
Q  1 aacaagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27908175 aacaagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg 27908274  T
Q  101 ttagttagggtttcttatgatcgctgattttgttacttttaattttgcttactcgatttattttaagggttttattaaaa-ttcgtgtctgctaggtttt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27908275 ttagttagggtttcttatgatcgctgattttgttacttttaattttgcttactcgatttattttaagggttttattaaaatttcgtgtctgctaggtttt 27908374  T
Q  200 acaattgaaattatttgtgaaaattctactgataaaacaacaaagaaaaactatgggtgtgtgtgtttggaatttggattaggttacttttatgg 294  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  27908375 acaattgaaattatttgtgaaaattctactaataaaacaacaaagaaaaactatgg--gtgtgtgtttggaatttggattaggttacttttatgg 27908467  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 31306682 - 31306589
Alignment:
Q  5 agatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatcca 98  Q
    ||||||||||||| || ||||| ||||| ||||| || |||||||| ||||| ||||||  ||| || || || || |||||||||||||||||    
T  31306682 agatgcagatctttgtgaaaacattgacaggaaaaaccatcactcttgaggtagagagttccgatacaattgataatgtcaaggccaagatcca 31306589  T

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Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 106
Target Start/End: Complemental strand, 40493184 - 40493082
Alignment:
Q  4 aagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccaggtta 103  Q
    ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  40493184 aagatgcagatcttcgtgaagactttgaccggaaagactatcaccctcgaggttgagagcagcgacacaatcgacaacgtcaaggccaagatccaggtta 40493085  T
Q  104 gtt 106  Q
    |||    
T  40493084 gtt 40493082  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 33772936 - 33773031
Alignment:
Q  5 agatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg 100  Q
    ||||||| |||||||| |||||  | || |||||||| |||||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||    
T  33772936 agatgcaaatcttcgtgaaaaccctcactggaaagaccatcactctcgaggttgagagttccgacaccatcgacaacgttaaggctaagatccagg 33773031  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 36459855 - 36459952
Alignment:
Q  3 caagatgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg 100  Q
    |||||||||||||||||| |||||  | || || ||||| || || ||||||||||||  |  |||||| |||||||| ||||| |||||||||||||    
T  36459855 caagatgcagatcttcgtgaaaaccctaacagggaagacgataaccctcgaggttgagtcttccgacacaatcgacaatgtcaaagccaagatccagg 36459952  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 33775031 - 33775065
Alignment:
Q  66 cgacaccatcgacaacgtcaaggccaagatccagg 100  Q
    ||||||||||||||||||||| |||||||||||||    
T  33775031 cgacaccatcgacaacgtcaaagccaagatccagg 33775065  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 42609768 - 42609683
Alignment:
Q  7 atgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaa 92  Q
    |||||||||||||| |||||  | ||||| || || ||||| |||||||||||||| || ||||| |||||||| |||||||||||    
T  42609768 atgcagatcttcgtgaaaaccctaaccgggaaaaccatcaccctcgaggttgagagcagtgacacaatcgacaatgtcaaggccaa 42609683  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 25948399 - 25948487
Alignment:
Q  7 atgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagat 95  Q
    |||||||| ||||| |||||  | || || ||||| || |||||||| || |||||||| |||||||||||||| ||||| ||||||||    
T  25948399 atgcagatattcgtgaaaaccctaacagggaagacaattactctcgaagtcgagagtagtgacaccatcgacaatgtcaaagccaagat 25948487  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 42075576 - 42075669
Alignment:
Q  7 atgcagatcttcgtcaaaactttgaccggaaagactatcactctcgaggttgagagtagcgacaccatcgacaacgtcaaggccaagatccagg 100  Q
    |||||||||||||| |||||  | ||||| ||||||||||| || ||||| |||   |||||||| ||||| |||||||| || ||||| ||||    
T  42075576 atgcagatcttcgtgaaaaccctaaccggcaagactatcacccttgaggtggagtcaagcgacactatcgataacgtcaaagctaagattcagg 42075669  T

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