View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16147_low_3 (Length: 394)

Name: NF16147_low_3
Description: NF16147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16147_low_3
NF16147_low_3
[»] chr5 (12 HSPs)
chr5 (15-389)||(12078014-12078390)
chr5 (268-381)||(26119201-26119315)
chr5 (95-153)||(25770523-25770579)
chr5 (358-389)||(12078389-12078420)
chr5 (122-153)||(27276600-27276631)
chr5 (358-389)||(32160276-32160307)
chr5 (268-306)||(106858-106896)
chr5 (355-389)||(11208588-11208622)
chr5 (268-306)||(21420246-21420284)
chr5 (345-382)||(20689706-20689743)
chr5 (356-389)||(22586563-22586596)
chr5 (96-151)||(35932891-35932949)
[»] chr1 (17 HSPs)
chr1 (117-389)||(23917119-23917388)
chr1 (122-319)||(23549551-23549744)
chr1 (291-389)||(18515453-18515552)
chr1 (268-389)||(25398806-25398928)
chr1 (95-224)||(24218564-24218696)
chr1 (96-153)||(2820094-2820153)
chr1 (323-382)||(22639744-22639803)
chr1 (96-153)||(16233944-16234002)
chr1 (95-151)||(29214994-29215052)
chr1 (268-306)||(5929081-5929119)
chr1 (122-160)||(25398696-25398734)
chr1 (122-189)||(27858009-27858078)
chr1 (348-389)||(23190800-23190841)
chr1 (313-374)||(30497475-30497535)
chr1 (96-151)||(12283590-12283646)
chr1 (95-151)||(20959857-20959912)
chr1 (353-389)||(21543563-21543599)
[»] chr8 (14 HSPs)
chr8 (268-381)||(17879066-17879180)
chr8 (96-223)||(15597972-15598097)
chr8 (138-382)||(24498741-24498989)
chr8 (274-381)||(15598227-15598336)
chr8 (268-382)||(17687384-17687499)
chr8 (323-389)||(24634805-24634874)
chr8 (123-220)||(17878949-17879046)
chr8 (358-389)||(21287926-21287957)
chr8 (358-389)||(21298536-21298567)
chr8 (122-188)||(23192668-23192735)
chr8 (358-389)||(45568514-45568545)
chr8 (122-160)||(27739097-27739135)
chr8 (95-151)||(16188461-16188517)
chr8 (117-153)||(25850886-25850922)
[»] chr7 (30 HSPs)
chr7 (122-381)||(9064827-9065083)
chr7 (267-383)||(19416697-19416814)
chr7 (268-389)||(9802583-9802704)
chr7 (241-381)||(12598517-12598659)
chr7 (96-389)||(3779303-3779584)
chr7 (268-382)||(13263185-13263300)
chr7 (269-389)||(20597776-20597897)
chr7 (268-389)||(9762091-9762212)
chr7 (122-224)||(9802306-9802408)
chr7 (268-381)||(12223071-12223186)
chr7 (276-382)||(16812408-16812517)
chr7 (122-160)||(12223305-12223343)
chr7 (344-389)||(15304123-15304168)
chr7 (268-381)||(1878896-1879010)
chr7 (268-381)||(9804564-9804677)
chr7 (138-301)||(12468516-12468675)
chr7 (122-159)||(16812264-16812301)
chr7 (96-160)||(19416433-19416500)
chr7 (122-230)||(23125184-23125292)
chr7 (122-189)||(5034521-5034590)
chr7 (326-379)||(10257740-10257794)
chr7 (122-160)||(11030269-11030307)
chr7 (180-230)||(19416621-19416671)
chr7 (348-389)||(2501613-2501654)
chr7 (123-224)||(9761914-9762014)
chr7 (122-162)||(16464247-16464288)
chr7 (356-389)||(19237668-19237701)
chr7 (96-151)||(1292247-1292305)
chr7 (268-300)||(11015368-11015400)
chr7 (121-225)||(20376663-20376767)
[»] chr3 (21 HSPs)
chr3 (122-376)||(12412238-12412491)
chr3 (178-389)||(7921300-7921504)
chr3 (172-382)||(19431877-19432085)
chr3 (267-382)||(19225229-19225345)
chr3 (144-382)||(17769625-17769862)
chr3 (144-382)||(19070926-19071163)
chr3 (268-385)||(1463757-1463876)
chr3 (127-239)||(16093703-16093815)
chr3 (122-306)||(13931223-13931405)
chr3 (353-389)||(45862187-45862223)
chr3 (358-389)||(13953793-13953824)
chr3 (268-306)||(27172440-27172478)
chr3 (348-381)||(4507697-4507730)
chr3 (268-301)||(14580716-14580749)
chr3 (345-389)||(19264175-19264220)
chr3 (356-389)||(27849714-27849747)
chr3 (353-389)||(13953758-13953794)
chr3 (96-151)||(22465383-22465439)
chr3 (96-151)||(29854607-29854665)
chr3 (353-389)||(37412131-37412167)
chr3 (95-144)||(47206868-47206919)
[»] chr2 (19 HSPs)
chr2 (122-382)||(14866582-14866844)
chr2 (122-338)||(27747118-27747331)
chr2 (293-381)||(33240169-33240258)
chr2 (293-381)||(33248090-33248179)
chr2 (267-382)||(16735547-16735663)
chr2 (267-382)||(18820227-18820344)
chr2 (280-390)||(40202936-40203047)
chr2 (122-228)||(16735740-16735846)
chr2 (123-209)||(25917938-25918025)
chr2 (122-224)||(40203117-40203219)
chr2 (325-370)||(30461980-30462026)
chr2 (95-151)||(23185178-23185234)
chr2 (95-151)||(23596441-23596497)
chr2 (95-188)||(22797603-22797700)
chr2 (268-306)||(968141-968179)
chr2 (268-306)||(1041702-1041740)
chr2 (328-389)||(16934078-16934140)
chr2 (356-389)||(21911409-21911442)
chr2 (326-389)||(27939479-27939543)
[»] scaffold0340 (2 HSPs)
scaffold0340 (267-389)||(17399-17522)
scaffold0340 (123-224)||(17269-17370)
[»] chr4 (14 HSPs)
chr4 (122-389)||(5902143-5902412)
chr4 (127-382)||(15193027-15193280)
chr4 (124-378)||(32469087-32469337)
chr4 (122-231)||(10329094-10329203)
chr4 (275-378)||(10328915-10329019)
chr4 (268-381)||(24619085-24619200)
chr4 (323-382)||(23087166-23087226)
chr4 (96-161)||(24618887-24618954)
chr4 (122-153)||(13890058-13890089)
chr4 (328-382)||(13977894-13977949)
chr4 (101-151)||(19665567-19665617)
chr4 (356-389)||(9266799-9266832)
chr4 (357-389)||(7222032-7222064)
chr4 (126-224)||(13693025-13693125)
[»] scaffold1339 (1 HSPs)
scaffold1339 (122-389)||(1525-1788)
[»] chr6 (18 HSPs)
chr6 (284-382)||(13242664-13242763)
chr6 (267-340)||(16739827-16739900)
chr6 (122-239)||(24471173-24471290)
chr6 (122-211)||(31720382-31720471)
chr6 (268-382)||(14757752-14757867)
chr6 (268-374)||(31720225-31720333)
chr6 (312-381)||(12183494-12183564)
chr6 (328-382)||(30372788-30372843)
chr6 (96-153)||(15551235-15551294)
chr6 (94-153)||(24398046-24398107)
chr6 (93-154)||(25777490-25777553)
chr6 (268-306)||(15551398-15551436)
chr6 (268-306)||(17047113-17047151)
chr6 (96-145)||(17317394-17317441)
chr6 (268-306)||(22292421-22292459)
chr6 (344-382)||(24471021-24471059)
chr6 (344-382)||(24481066-24481104)
chr6 (268-301)||(17063757-17063790)
[»] scaffold0606 (1 HSPs)
scaffold0606 (312-389)||(4986-5064)
[»] scaffold0211 (1 HSPs)
scaffold0211 (358-389)||(26-57)
[»] scaffold0084 (1 HSPs)
scaffold0084 (358-389)||(937-968)
[»] scaffold0103 (1 HSPs)
scaffold0103 (328-389)||(16136-16198)
[»] scaffold0040 (2 HSPs)
scaffold0040 (356-389)||(4561-4594)
scaffold0040 (347-383)||(4598-4634)
[»] scaffold0908 (1 HSPs)
scaffold0908 (353-389)||(4478-4514)
[»] scaffold0622 (1 HSPs)
scaffold0622 (347-383)||(3984-4020)
[»] scaffold0498 (1 HSPs)
scaffold0498 (117-224)||(4035-4143)
[»] scaffold0220 (1 HSPs)
scaffold0220 (353-389)||(2363-2399)


Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Original strand, 12078014 - 12078390
Alignment:
Q  15 tcacttctgacagtcttcactggacttctgctcaagatggtgagttgaccaataagatagcttttgaattcttgaaatccttgaaggtgagaaaaacata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12078014 tcacttctgacagtcttcactggacttctgctcaagatggtgagttgaccaataagatagcttttgaattcttgaaatccttgaaggtgagaaaaacata 12078113  T
Q  115 gggggatgttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaatt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12078114 gggggatgttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatgttcagagttaatt 12078213  T
Q  215 gcagcggatataaaagtgatatatagagagagataatagaaagacac--agaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctag 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  12078214 gcagcggatataaaagtgatatatagagagagataatagaaagacacaaagaattttatcttggtttcttccacaatccggaagtagtcaagtcgccttg 12078313  T
Q  313 tcacttacaagagatttttcactataattaccaagattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12078314 tcacttacaagagatttttcactataattaccaagattacaattgctcaagcacacaagcaagagacttcctatgct 12078390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 268 - 381
Target Start/End: Complemental strand, 26119315 - 26119201
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcac 366  Q
    ||||| ||||| |||||||||||||||||||||| |||| ||   | ||||||| |||||||||||||||||| || ||||||||||||| |||||| ||    
T  26119315 ttatcatggttccttccacaatccggaagtagtctagtccccctattacttacatgagatttttcactataatcacacaagattacaattgctcaagaac 26119216  T
Q  367 acaagcaagagactt 381  Q
    | ||| |||||||||    
T  26119215 ataagaaagagactt 26119201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 25770579 - 25770523
Alignment:
Q  95 ttgaaggtgagaaaaacatagggggatgttgaattgtgttagatttttcttctttttaa 153  Q
    ||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||    
T  25770579 ttgaaggtgagaaaaacatagaggg--gttgaattgtgttagctttttcttctttttaa 25770523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 389
Target Start/End: Original strand, 12078389 - 12078420
Alignment:
Q  358 ctcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||||||||||||    
T  12078389 ctcaagcacacaagcaagagacttcctatgct 12078420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 153
Target Start/End: Complemental strand, 27276631 - 27276600
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaa 153  Q
    ||||||||||||||||||||||||||||||||    
T  27276631 gttgaattgtgttagatttttcttctttttaa 27276600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 389
Target Start/End: Original strand, 32160276 - 32160307
Alignment:
Q  358 ctcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||||||||||||    
T  32160276 ctcaagcacacaagcaagagacttcctatgct 32160307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 106896 - 106858
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtc 306  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  106896 ttatcctggttccttccacaatccggaagtagtccagtc 106858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 355 - 389
Target Start/End: Complemental strand, 11208622 - 11208588
Alignment:
Q  355 ttactcaagcacacaagcaagagacttcctatgct 389  Q
    |||||||||||||||||||||||||||| ||||||    
T  11208622 ttactcaagcacacaagcaagagacttcttatgct 11208588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 21420246 - 21420284
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtc 306  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  21420246 ttatcctggttccttccacaatccggaagtagtccagtc 21420284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 20689706 - 20689743
Alignment:
Q  345 aagattacaattactcaagcacacaagcaagagacttc 382  Q
    |||||||||| | |||||||||||||||||||||||||    
T  20689706 aagattacaaatgctcaagcacacaagcaagagacttc 20689743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 22586596 - 22586563
Alignment:
Q  356 tactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||| ||||||||||    
T  22586596 tactcaagcacacaagcaagagatttcctatgct 22586563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 35932949 - 35932891
Alignment:
Q  96 tgaaggtgagaaaaacatagg---gggatgttgaattgtgttagatttttcttcttttt 151  Q
    ||||||||||||||||| | |   |||| ||||||||||||||| ||||||||||||||    
T  35932949 tgaaggtgagaaaaacacaagaaggggaggttgaattgtgttagctttttcttcttttt 35932891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 117 - 389
Target Start/End: Original strand, 23917119 - 23917388
Alignment:
Q  117 gggatgttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgc 216  Q
    |||| ||||||||||||||| ||||| || |||| || |||||| || ||  | ||||| |||||||||||||||| |||| |||||||||||||| | |    
T  23917119 gggaggttgaattgtgttagctttttattgttttaaattaagtccaaagtccagattcttatagagttcagaacctaaagcgatattcagagttaaattc 23917218  T
Q  217 agcggatataaaagtgatatatagagagagataatagaaagacacagaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcac 316  Q
     || |||||||||| ||||      |||||| || | | ||||||| ||  | ||||| ||| |||||| ||||||||||||||  |||| ||| |||||    
T  23917219 ggcagatataaaagagata------gagagagaagaaagagacacataaaatgatcctagttccttccataatccggaagtagtacagtctccttgtcac 23917312  T
Q  317 ttacaagagattttt--cactataattac-caagattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||||||||||||||  ||||||||| || ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  23917313 ttacaagagatttttttcactataatcacacaagattacaattgctcaagcacacaagcaagagacttcttatgct 23917388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 122 - 319
Target Start/End: Original strand, 23549551 - 23549744
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    ||||||||||||||| ||||||||||||||||||||||| || ||| |  |||| ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  23549551 gttgaattgtgttagttttttcttctttttaactaagtccaaagttcagcttctgatagagttcagaacctggagcaatgttcagagttaagtgcagcgg 23549650  T
Q  222 atataaaagtgatatatagagagagataatagaaagacacagaat--tttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcactta 319  Q
    ||||||||| |||||      ||  | || ||||||||||| |||  ||||||| |||| |||||||||||||||||||||  |||| ||| ||||||||    
T  23549651 atataaaagagatat------aggaagaagagaaagacacaaaatcatttatcccggttccttccacaatccggaagtagttcagtccccttgtcactta 23549744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 18515453 - 18515552
Alignment:
Q  291 cggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||| |||| ||  |||||||| |  ||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||||| |||||||    
T  18515453 cggaagtagtctagtccccatgtcacttatataagatttttcactataatcacacaagattacaattgctcaagcacacaagcaaaagactttctatgct 18515552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 389
Target Start/End: Original strand, 25398806 - 25398928
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcac 366  Q
    ||||| |||||  |||||||||||||  |||||| |||  ||  |||||||| | |||||||||||||| ||| || ||||||||||||| |||||||||    
T  25398806 ttatcttggttctttccacaatccggtcgtagtctagttcccctgtcacttaaaggagatttttcactacaatcacacaagattacaattgctcaagcac 25398905  T
Q  367 acaagcaagagacttcctatgct 389  Q
    ||||  || ||||||||||||||    
T  25398906 acaactaaaagacttcctatgct 25398928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 24218564 - 24218696
Alignment:
Q  95 ttgaaggtgagaaaaacatagg--gggatgttgaattgtgttagatttttcttcttttt-aactaagtcaaaggttaaaattctaatagagttcagaacc 191  Q
    |||| ||||||||||||| | |  ||| |||||||||||||||| |||||||||||||| ||||||||  || ||  ||| ||| ||||||||||||  |    
T  24218564 ttgatggtgagaaaaacacaagaaggggtgttgaattgtgttagttttttcttctttttaaactaagttcaaagtccaaagtctgatagagttcagattc 24218663  T
Q  192 tgaagcaatattcagagttaattgcagcggata 224  Q
    ||||||||| |||| |||| | |||||| ||||    
T  24218664 tgaagcaatgttcacagtttaatgcagcagata 24218696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 2820153 - 2820094
Alignment:
Q  96 tgaaggtgagaaaaacatagg--gggatgttgaattgtgttagatttttcttctttttaa 153  Q
    ||||||||||||||||||| |  |||| ||||||||||||||| ||||||||||||||||    
T  2820153 tgaaggtgagaaaaacataagaagggaggttgaattgtgttagttttttcttctttttaa 2820094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 22639744 - 22639803
Alignment:
Q  323 gagatttttcactataattac-caagattacaattactcaagcacacaagcaagagacttc 382  Q
    ||||||||||||||||||  | |||||||| ||||||||||||||||||||||||||||||    
T  22639744 gagatttttcactataatcgcacaagatta-aattactcaagcacacaagcaagagacttc 22639803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 16234002 - 16233944
Alignment:
Q  96 tgaaggtgagaaaaacataggg-ggatgttgaattgtgttagatttttcttctttttaa 153  Q
    ||||||||||||||||||| |  ||| ||||||||||||||| ||||||||||||||||    
T  16234002 tgaaggtgagaaaaacataagaaggaggttgaattgtgttagctttttcttctttttaa 16233944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 29214994 - 29215052
Alignment:
Q  95 ttgaaggtgagaaaaacatagg--gggatgttgaattgtgttagatttttcttcttttt 151  Q
    |||||||||||||||||||| |  ||| ||||||||||| |||| ||||||||||||||    
T  29214994 ttgaaggtgagaaaaacataagaaggggtgttgaattgtattagttttttcttcttttt 29215052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 5929081 - 5929119
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtc 306  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  5929081 ttatcctggtttcttccacaaaccggaagtagtctagtc 5929119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 25398696 - 25398734
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtc 160  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  25398696 gttgaattgtgttaattttttcttctttttaactaagtc 25398734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 27858009 - 27858078
Alignment:
Q  122 gttgaattgtgttagatttttcttcttttt--aactaagtcaaaggttaaaattctaatagagttcagaa 189  Q
    ||||||||||||||| ||||||||||||||  ||||||||| || ||| | | ||| |||||||||||||    
T  27858009 gttgaattgtgttagctttttcttctttttaaaactaagtccaatgttcagagtctgatagagttcagaa 27858078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 23190800 - 23190841
Alignment:
Q  348 attacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||||||||||||||| |||||| |||||||||||| |||||    
T  23190800 attacaattactcaaggacacaaccaagagacttccaatgct 23190841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 30497475 - 30497535
Alignment:
Q  313 tcacttacaagagatttttcactataattaccaagattacaattactcaagcacacaagcaa 374  Q
    |||||| ||||||||||| |||||||||||  |||||||||| | ||||||||||| |||||    
T  30497475 tcacttccaagagatttt-cactataattaaaaagattacaaatgctcaagcacacgagcaa 30497535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 12283590 - 12283646
Alignment:
Q  96 tgaaggtgagaaaaacataggg-ggatgttgaattgtgttagatttttcttcttttt 151  Q
    ||||||||||||||||| | |  ||||||||||||||||||| ||||||||| ||||    
T  12283590 tgaaggtgagaaaaacacaagaaggatgttgaattgtgttagctttttcttcgtttt 12283646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 20959912 - 20959857
Alignment:
Q  95 ttgaaggtgagaaaaacatagggggatgttgaattgtgttagatttttcttcttttt 151  Q
    |||||||||||||||||| | ||||  ||||||||||||||| ||||||||| ||||    
T  20959912 ttgaaggtgagaaaaacacaaggggg-gttgaattgtgttagttttttcttcgtttt 20959857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 21543563 - 21543599
Alignment:
Q  353 aattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||| |||||||||||||||||||||||| |||||||    
T  21543563 aattgctcaagcacacaagcaagagactttctatgct 21543599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 268 - 381
Target Start/End: Original strand, 17879066 - 17879180
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcac 366  Q
    ||||||||||| ||||||||||||||||||| || |||| ||| ||||||||||||||||||||||  ||||| || ||||||||||||| |||||||||    
T  17879066 ttatcctggttccttccacaatccggaagtaatccagtccccttgtcacttacaagagatttttcataataatcacacaagattacaattgctcaagcac 17879165  T
Q  367 acaagcaagagactt 381  Q
    |||||||||||||||    
T  17879166 acaagcaagagactt 17879180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 15597972 - 15598097
Alignment:
Q  96 tgaaggtgagaaaaacatagggggatgttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaa 195  Q
    ||||||||||||||||| | ||||  |||| |||||||||  |||||||||||||||| ||||| ||| ||| || ||||||||||||||||||||||||    
T  15597972 tgaaggtgagaaaaacacaagggg--gttgtattgtgttaactttttcttctttttaaataagttaaaagttcaacttctaatagagttcagaacctgaa 15598069  T
Q  196 gcaatattcagagttaattgcagcggat 223  Q
    |||||  |||||||||| ||||| ||||    
T  15598070 gcaatgatcagagttaagtgcagtggat 15598097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 382
Target Start/End: Complemental strand, 24498989 - 24498741
Alignment:
Q  138 tttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcggatataaaagtgatata 237  Q
    ||||||||||||||||||||||| |  ||| | | ||| ||| || |||||  || || |||| ||| |||| || ||||||||||||||||| |||| |    
T  24498989 tttttcttctttttaactaagtccagagttcatagtctgataaagatcagagtcttaaacaatgttctgagtcaaatgcagcggatataaaagagataga 24498890  T
Q  238 tagagagagataatagaaaga--cacagaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaag-agatttttcac 334  Q
     |||| |||| || |||||||  ||||| |  ||||||||||| |||||||||||| ||||||||| |||| ||    || ||  ||| ||||||| |||    
T  24498889 gagagggagaaaaaagaaagagacacaggaaattatcctggttccttccacaatccagaagtagtccagtcccccttgcatttcgaaggagattttccac 24498790  T
Q  335 tataattac-caagattacaattactcaagcacacaagcaagagacttc 382  Q
    |||||| || ||||||||||||| ||||||||||||||||||| |||||    
T  24498789 tataatcacacaagattacaattgctcaagcacacaagcaagatacttc 24498741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 15598227 - 15598336
Alignment:
Q  274 tggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagaga-tttttcactataattac-caagattacaattactcaagcacacaag 371  Q
    ||||| |||||| ||||||||||||||  |||  ||| ||||||||||||||| ||||| |||||||| || |||||||||||||  |||||||||||||    
T  15598227 tggttgcttccataatccggaagtagtacagttcccttgtcacttacaagagatttttttactataatcacacaagattacaattggtcaagcacacaag 15598326  T
Q  372 caagagactt 381  Q
    ||||||||||    
T  15598327 caagagactt 15598336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 382
Target Start/End: Original strand, 17687384 - 17687499
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaa-gagatttttcactataattacc-aagattacaattactcaagca 365  Q
    ||||||||||| ||| |||||| |||| ||||||||||| ||    ||||| ||| |||||||||||||||||| ||  |||||||||||| ||||||||    
T  17687384 ttatcctggttccttacacaattcgga-gtagtcaagtctcccttgcacttccaaagagatttttcactataatcacataagattacaattgctcaagca 17687482  T
Q  366 cacaagcaagagacttc 382  Q
    |||||||||||||||||    
T  17687483 cacaagcaagagacttc 17687499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 24634805 - 24634874
Alignment:
Q  323 gagatttttcactataattac---caagattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||||||||||||||||| ||   ||||||||||| | |||||||||||||| |||||||||||||||||    
T  24634805 gagatttttcactataatcacacacaagattacaaattctcaagcacacaagtaagagacttcctatgct 24634874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 17878949 - 17879046
Alignment:
Q  123 ttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcg 220  Q
    |||||||||||||  ||||||||||||| ||| ||||  || ||| |  |||| |||||||||| || || || |||||||||||||||| |||||||    
T  17878949 ttgaattgtgttaactttttcttcttttaaacaaagtttaaagttcagcttctgatagagttcaaaatctcaaacaatattcagagttaaatgcagcg 17879046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 389
Target Start/End: Original strand, 21287926 - 21287957
Alignment:
Q  358 ctcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||||||||||||    
T  21287926 ctcaagcacacaagcaagagacttcctatgct 21287957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 389
Target Start/End: Original strand, 21298536 - 21298567
Alignment:
Q  358 ctcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||||||||||||    
T  21298536 ctcaagcacacaagcaagagacttcctatgct 21298567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 23192735 - 23192668
Alignment:
Q  122 gttgaattgtgttagatttttcttcttttt-aactaagtcaaaggttaaaattctaatagagttcaga 188  Q
    ||||||||||||||| |||||||||||||| ||||||||| || ||| | | ||| ||||||||||||    
T  23192735 gttgaattgtgttagttttttcttctttttaaactaagtccaatgtttagagtctgatagagttcaga 23192668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 389
Target Start/End: Complemental strand, 45568545 - 45568514
Alignment:
Q  358 ctcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||||||||||||    
T  45568545 ctcaagcacacaagcaagagacttcctatgct 45568514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 27739097 - 27739135
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtc 160  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  27739097 gttgaattgtgttagctttttcttcttttaaactaagtc 27739135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 16188461 - 16188517
Alignment:
Q  95 ttgaaggtgagaaaaacatagggggatgttgaattgtgttagatttttcttcttttt 151  Q
    ||||||||||||||||||   ||||  ||||||||||||||| ||||| ||||||||    
T  16188461 ttgaaggtgagaaaaacaccagggggggttgaattgtgttagttttttattcttttt 16188517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 25850922 - 25850886
Alignment:
Q  117 gggatgttgaattgtgttagatttttcttctttttaa 153  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  25850922 gggaggttgaattgtgttagctttttcttctttttaa 25850886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 122 - 381
Target Start/End: Original strand, 9064827 - 9065083
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    ||||||||||||||| ||||| ||||||||||| |||||| | |||    |||  ||||||||||||| ||| | |||| |||| ||| || || |||||    
T  9064827 gttgaattgtgttagcttttttttctttttaacaaagtcagaagtttggcttccgatagagttcagaatctggatcaatgttcaaagtcaagtgtagcgg 9064926  T
Q  222 atataaaagtgatatatagagagagataatagaaagacacagaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttaca 321  Q
    || ||||    | ||| | |||||||||| || ||||||||  | || |||||||||  |||||||||| ||| ||||||||||| ||| ||||| ||||    
T  9064927 atgtaaat---agataaatagagagataagagcaagacacaacaatt-atcctggttcattccacaatctggatgtagtcaagtccccttgtcacctaca 9065022  T
Q  322 agagatttttcactataattac-caagattacaattactcaagcacacaagcaagagactt 381  Q
    ||||| ||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||    
T  9065023 agagacttttcactataatcactcaagattacaattgctcaagcacacaagcaagatactt 9065083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 267 - 383
Target Start/End: Original strand, 19416697 - 19416814
Alignment:
Q  267 tttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagca 365  Q
    |||||| ||||| |||||| ||||||||||||||| ||||  || |||||||| |||||||||||||||||||| || ||||||||||||| ||||||||    
T  19416697 tttatcatggttccttccataatccggaagtagtctagtcctcttgtcacttataagagatttttcactataatcacacaagattacaattgctcaagca 19416796  T
Q  366 cacaagcaagagacttcc 383  Q
    |||||||||||| |||||    
T  19416797 cacaagcaagagccttcc 19416814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 268 - 389
Target Start/End: Original strand, 9802583 - 9802704
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcac 366  Q
    ||||||||||| |||||| ||||||||||||||| |||| ||| ||||||||||  ||  ||||| ||||||| || ||||||||||||| |||||||||    
T  9802583 ttatcctggttgcttccataatccggaagtagtccagtcccct-gtcacttacagaagtcttttcgctataatcacacaagattacaattgctcaagcac 9802681  T
Q  367 acaagcaagagacttcctatgct 389  Q
    | |||||||||||||||||||||    
T  9802682 ataagcaagagacttcctatgct 9802704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 381
Target Start/End: Complemental strand, 12598659 - 12598517
Alignment:
Q  241 agagagataatagaaagacacagaatt-ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataa 339  Q
    |||||||||| ||||||||||| ||   ||||||| |||  ||||||||||| ||||||||| || |  || ||||| |||||||||||||||| |||||    
T  12598659 agagagataagagaaagacacaaaacagttatcctagttctttccacaatcccgaagtagtctagacctcttgtcacctacaagagatttttcagtataa 12598560  T
Q  340 ttac-caagattacaattactcaagcacacaagcaagagactt 381  Q
    | || ||||||||||| ||||||||||||||||||||| ||||    
T  12598559 tgacacaagattacaaatactcaagcacacaagcaagatactt 12598517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 389
Target Start/End: Complemental strand, 3779584 - 3779303
Alignment:
Q  96 tgaaggtgagaaaaacataggg-ggatgttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctga 194  Q
    ||||||||||||||||||| |  ||  ||||||||||||||| |||||||| | |||||||||||| || ||| ||  |||  |||||||||||  ||||    
T  3779584 tgaaggtgagaaaaacataagaagggggttgaattgtgttagctttttcttttatttaactaagtctaaagttcaacctctggtagagttcagagtctga 3779485  T
Q  195 agcaatattcagagttaattgcagcggatataaaagtgatatatagagagagataatagaaagacacagaattttatcctggtttcttccacaatccgga 294  Q
    |||||| |||| |||||| |||| |||||            |||| |||||||  | ||| | ||| | ||||  ||| |||||  ||||||||||| ||    
T  3779484 agcaatgttcaaagttaagtgcaacggat------------tataaagagagaagaaagagacacaaacaatt--atcttggttctttccacaatccaga 3779399  T
Q  295 agtagtcaagtcgcctagtcacttacaagagatttttcactataat-taccaagattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||  |||| ||  |||||||||| ||||||||||||||||||  | || |||||||||| |||||||| |||||||||| ||||||||||||    
T  3779398 agtagttcagtccccctgtcacttacatgagatttttcactataatcaaacatgattacaattgctcaagcaaacaagcaagatacttcctatgct 3779303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 382
Target Start/End: Original strand, 13263185 - 13263300
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcac 366  Q
    ||||||||||| |||||| ||| |||| |||||| ||||  || || ||||||||||||||||||| |||||| || ||||||||||| | |||||||||    
T  13263185 ttatcctggttccttccataatacggatgtagtctagtccgcttgttacttacaagagatttttcattataatcactcaagattacaaatgctcaagcac 13263284  T
Q  367 acaagcaagagacttc 382  Q
    |||||||| |||||||    
T  13263285 acaagcaaaagacttc 13263300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 389
Target Start/End: Original strand, 20597776 - 20597897
Alignment:
Q  269 tatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataatta-ccaagattacaattactcaagcaca 367  Q
    |||||||||| ||| ||||||||||||||| |  |||  ||| |||||||||| ||||||| |||||||||| |  ||||||||||||| ||||||||||    
T  20597776 tatcctggttcctttcacaatccggaagtaattcagtgcccttgtcacttacacgagatttgtcactataatcatacaagattacaattgctcaagcaca 20597875  T
Q  368 caagcaagagacttcctatgct 389  Q
      |||||||||||| |||||||    
T  20597876 ttagcaagagacttactatgct 20597897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 389
Target Start/End: Original strand, 9762091 - 9762212
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcac 366  Q
    |||||||||||||||||| |||||| || ||||| |||| ||| ||||||||||  ||  ||||| ||||||| || |||||||||||||  | ||||||    
T  9762091 ttatcctggtttcttccataatccgtaaatagtccagtcccct-gtcacttacagaagtcttttcgctataatcacacaagattacaattggttaagcac 9762189  T
Q  367 acaagcaagagacttcctatgct 389  Q
    |||||||||||||||| ||||||    
T  9762190 acaagcaagagacttcatatgct 9762212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 9802306 - 9802408
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    ||||||||||||||||||||||||||||| |||||| || || ||| | ||||||||||||||||||  |||||| |   ||||||||||| |||||| |    
T  9802306 gttgaattgtgttagatttttcttcttttgaactaattccaaagttcagattctaatagagttcagattctgaagtagagttcagagttaagtgcagcag 9802405  T
Q  222 ata 224  Q
    |||    
T  9802406 ata 9802408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 381
Target Start/End: Complemental strand, 12223186 - 12223071
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaag-agatttttcactataattac-caagattacaattactcaagca 365  Q
    ||||||||||||| |||||||||| ||||| ||| |||| ||    |||||  ||| ||||||||||||||||| || ||||||||||||| ||||| ||    
T  12223186 ttatcctggtttcatccacaatccagaagtggtccagtcccccttgcacttctaaggagatttttcactataatcacacaagattacaattgctcaaaca 12223087  T
Q  366 cacaagcaagagactt 381  Q
    ||||||||||||||||    
T  12223086 cacaagcaagagactt 12223071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 382
Target Start/End: Original strand, 16812408 - 16812517
Alignment:
Q  276 gtttcttccacaatccggaagtagt-caagtcgcctagtcacttacaagagatttttcactataat--taccaagattacaattactcaagcacacaag- 371  Q
    ||||||||||||||| ||||||||| || ||| | | |||||||||||||||||||||||||||||  ||| | |||||||||| ||||| ||||||||     
T  16812408 gtttcttccacaatcaggaagtagttcaggtctctt-gtcacttacaagagatttttcactataatcatacaaggattacaattgctcaaacacacaagc 16812506  T
Q  372 caagagacttc 382  Q
    |||||||||||    
T  16812507 caagagacttc 16812517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 12223343 - 12223305
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtc 160  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12223343 gttgaattgtgttagatttttcttctttttaactaagtc 12223305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 15304123 - 15304168
Alignment:
Q  344 caagattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  15304123 caagattacaattgctcaagcacacaagcaagagacttcatatgct 15304168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 381
Target Start/End: Complemental strand, 1879010 - 1878896
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaag-agatttttcactataattacc-aagattacaattactcaagca 365  Q
    ||||||||||| |||||||||| ||||||||||| || | ||    ||||| |||| ||||||| ||||||||| ||  |||||||||||| ||||||||    
T  1879010 ttatcctggttccttccacaattcggaagtagtccagccccccttgcacttccaaggagatttt-cactataatcacataagattacaatttctcaagca 1878912  T
Q  366 cacaagcaagagactt 381  Q
    || |||||||||||||    
T  1878911 cagaagcaagagactt 1878896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 381
Target Start/End: Original strand, 9804564 - 9804677
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcac 366  Q
    ||||||||||| |||||| ||| || |||||||| |||| | | |||| |||||  ||  ||||| ||||||| || ||||||||||||| |||||||||    
T  9804564 ttatcctggttccttccaaaattcgaaagtagtctagtctcat-gtcagttacagaagtcttttcgctataataacacaagattacaattgctcaagcac 9804662  T
Q  367 acaagcaagagactt 381  Q
    |||||||||| ||||    
T  9804663 acaagcaagacactt 9804677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 301
Target Start/End: Original strand, 12468516 - 12468675
Alignment:
Q  138 tttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcggatataaaagtgatata 237  Q
    ||||||||||||||||| ||||| ||||||||  || | |||| ||| | ||  |||| |||| ||||||||||| ||||| |||||||||   || |||    
T  12468516 tttttcttctttttaacaaagtccaaggttaagcttttgatagtgtttaaaatttgaatcaatgttcagagttaaatgcagtggatataaa---gagata 12468612  T
Q  238 tagagagagataatagaaagacacagaattttatcctggtttcttccacaatccggaagtagtc 301  Q
     ||||  ||| || ||||||||||| |   |||| |||||| |||||| |||||||||||||||    
T  12468613 gagag-tagagaaaagaaagacacaaataattattctggttccttccataatccggaagtagtc 12468675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 16812264 - 16812301
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagt 159  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  16812264 gttgaattgtgttagctttttcttctttttaactaagt 16812301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 19416433 - 19416500
Alignment:
Q  96 tgaaggtgagaaaaacatagg---gggatgttgaattgtgttagatttttcttctttttaactaagtc 160  Q
    ||||||||||||||||||| |   |||| | ||||||||||||| |||||||||||||||| ||||||    
T  19416433 tgaaggtgagaaaaacataagaaggggaggatgaattgtgttagctttttcttctttttaaataagtc 19416500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 23125184 - 23125292
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    ||||||||||||||| ||||||||||||| ||||||||| || ||| | | | | ||| |||||||| |||| |||||| |||| |||  | |||||  |    
T  23125184 gttgaattgtgttagctttttcttcttttaaactaagtccaaagttcatactttgataaagttcagagcctggagcaatgttcaaagtctaatgcagaag 23125283  T
Q  222 atataaaag 230  Q
    |||||||||    
T  23125284 atataaaag 23125292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 5034521 - 5034590
Alignment:
Q  122 gttgaattgtgttagatttttcttcttttt--aactaagtcaaaggttaaaattctaatagagttcagaa 189  Q
    |||||||||||||| |||||||||||||||  ||||||||| || ||| | | ||| |||||||||||||    
T  5034521 gttgaattgtgttaaatttttcttctttttaaaactaagtccaatgtttagagtctgatagagttcagaa 5034590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 10257794 - 10257740
Alignment:
Q  326 atttttcactataattaccaa-gattacaattactcaagcacacaagcaagagac 379  Q
    ||||||||||||||| || || |||||||||| | ||||||||||||||||||||    
T  10257794 atttttcactataatcacaaaagattacaatttcgcaagcacacaagcaagagac 10257740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 11030307 - 11030269
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtc 160  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  11030307 gttgaattgtgttagatttttctccttttgaactaagtc 11030269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 19416621 - 19416671
Alignment:
Q  180 gagttcagaacctgaagcaatattcagagttaattgcagcggatataaaag 230  Q
    |||||||||| ||||| |||| ||||||||||| |||||||| ||||||||    
T  19416621 gagttcagaatctgaaacaatgttcagagttaagtgcagcgggtataaaag 19416671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 2501654 - 2501613
Alignment:
Q  348 attacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||| ||||||||||||||||||||| || |||||||    
T  2501654 attacaattgctcaagcacacaagcaagagattttctatgct 2501613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 9761914 - 9762014
Alignment:
Q  123 ttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgga 222  Q
    |||||||||||||| |||| |||||||| ||||||||| || ||| | ||||| |||||||||| |  |||||| |   ||||||||||| |||||| ||    
T  9761914 ttgaattgtgttagctttt-cttcttttgaactaagtccaaagttcagattctgatagagttcaaagtctgaagtagagttcagagttaagtgcagcaga 9762012  T
Q  223 ta 224  Q
    ||    
T  9762013 ta 9762014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 16464247 - 16464288
Alignment:
Q  122 gttgaattgtgttagatttttcttcttttt-aactaagtcaa 162  Q
    ||||||||||||||| |||||||||||||| |||||||||||    
T  16464247 gttgaattgtgttagttttttcttctttttaaactaagtcaa 16464288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 19237701 - 19237668
Alignment:
Q  356 tactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||| ||||||||||    
T  19237701 tactcaagcacacaagcaagagatttcctatgct 19237668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 1292247 - 1292305
Alignment:
Q  96 tgaaggtgagaaaaacatagg---gggatgttgaattgtgttagatttttcttcttttt 151  Q
    ||||||||||||||||| | |   |||| ||||||||||||||| ||||||||||||||    
T  1292247 tgaaggtgagaaaaacacaagaaggggaggttgaattgtgttagctttttcttcttttt 1292305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 11015368 - 11015400
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagt 300  Q
    ||||||||||| |||||||||||||||||||||    
T  11015368 ttatcctggttccttccacaatccggaagtagt 11015400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 225
Target Start/End: Original strand, 20376663 - 20376767
Alignment:
Q  121 tgttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcg 220  Q
    |||||||||||||||| |||||||| | ||||||| |||| || ||| |  |||| || ||||||| ||||| |||||   ||||||||||| ||| ||     
T  20376663 tgttgaattgtgttagttttttcttgtctttaacttagtctaatgttcagcttctgatggagttcaaaacctaaagcagcgttcagagttaagtgcggca 20376762  T
Q  221 gatat 225  Q
    |||||    
T  20376763 gatat 20376767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 122 - 376
Target Start/End: Complemental strand, 12412491 - 12412238
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    ||||||||||||||| |||||||| | |||||||||||| || ||  || |||| ||| |||||||||  ||||  ||| |||||| |||| ||||||||    
T  12412491 gttgaattgtgttagctttttcttatatttaactaagtccaaagtccaacttctgatatagttcagaatttgaaataatgttcagaattaagtgcagcgg 12412392  T
Q  222 atataaaagtgatatatagagagagataatagaaagacacagaat--tttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcactta 319  Q
    ||||||||| || |   |||||||    | ||||||||||| ||   |||||  ||||| ||| |||||| ||||||||||| |||| ||| || | |||    
T  12412391 atataaaagagaaaacgagagaga----agagaaagacacaaaacaatttattttggttccttgcacaattcggaagtagtccagtccccttgttaatta 12412296  T
Q  320 caagagatttttcactataattac-caagattacaattactcaagcacacaagcaaga 376  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||    
T  12412295 caagagatttttcactataatcacgcaagattacaatttctcaagcacacaagaaaga 12412238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 178 - 389
Target Start/End: Complemental strand, 7921504 - 7921300
Alignment:
Q  178 tagagttcagaacctgaagcaatattcagagttaattgcagcggatataaaagtgatatatagagagagataatagaaagacacaga-attttatcctgg 276  Q
    ||||||| |||||||||| | || |||| |||||| | ||||||||||||||| ||||        |||| || ||||||||||| | | |||||| |||    
T  7921504 tagagtttagaacctgaaactatgttcaaagttaaatacagcggatataaaagagata--------gagagaagagaaagacacaaacaatttatcgtgg 7921413  T
Q  277 tttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattaccaagattacaattactcaagcacacaagcaaga 376  Q
    || |||  ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |   |||||| || | |||||||||||||||||||    
T  7921412 ttccttgtacaatccggaagtagtccagtccccttgtcacttacaagagatttttcactataatcaatcagattataaatgctcaagcacacaagcaaga 7921313  T
Q  377 gacttcctatgct 389  Q
    |||||| ||||||    
T  7921312 gacttcatatgct 7921300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 172 - 382
Target Start/End: Complemental strand, 19432085 - 19431877
Alignment:
Q  172 ttctaatagagttcagaacctgaagcaatattcagagttaattgcagcggatataaaagtgatatatagagagagataatagaaagacaca-gaatttta 270  Q
    |||| |||| ||||||||| ||||||||| || |||||||| |||||| ||||| |||| | ||    |||||||| || | | ||||||| | | ||||    
T  19432085 ttctgatagcgttcagaacttgaagcaatgttaagagttaagtgcagcagatatgaaagagcta----gagagagagaagaaagagacacaagtaattta 19431990  T
Q  271 tcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcacaca 369  Q
    |||| ||| ||||||||||||| || ||||| ||||  || |||||||||| |||||||||||||||||| || ||||||||||||| |||||| |||||    
T  19431989 tcctagttccttccacaatccgaaattagtccagtcctcttgtcacttacacgagatttttcactataatcacacaagattacaattgctcaagaacaca 19431890  T
Q  370 agcaagagacttc 382  Q
    |||||||||||||    
T  19431889 agcaagagacttc 19431877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 382
Target Start/End: Original strand, 19225229 - 19225345
Alignment:
Q  267 tttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataat-taccaagattacaattactcaagca 365  Q
    |||||||||||| ||| ||||||||| |||||||| |||| ||| |||| |||||||||||||||||| |||||  | ||||||||||||| ||||||||    
T  19225229 tttatcctggttcctttcacaatccgtaagtagtctagtccccttgtcatttacaagagatttttcaccataatcaaacaagattacaattgctcaagca 19225328  T
Q  366 cacaagcaagagacttc 382  Q
    ||||||||||| |||||    
T  19225329 cacaagcaagaaacttc 19225345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 382
Target Start/End: Complemental strand, 17769862 - 17769625
Alignment:
Q  144 ttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcggatataaaagtgatatatagaga 243  Q
    ||||||||||||||||  || ||| | | ||| ||||||||||||  ||  | |||| |||| ||| ||||| |||||||||||||| ||||    ||||    
T  17769862 ttctttttaactaagtttaaagttcagaatctgatagagttcagattctagaacaatgttcacagtcaattgtagcggatataaaagagata----gaga 17769767  T
Q  244 gagataatagaaagacacagaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctagt-cacttacaag-agatttttcactataatt 341  Q
     ||| || | | ||||||| |   ||||||| ||| |||||||||||||||| ||||| |||  ||   | ||||| |||| |||||||||||||||||     
T  17769766 tagagaagaaagagacacaaacaattatcctagttccttccacaatccggaaatagtccagttcccatttgcacttccaaggagatttttcactataatc 17769667  T
Q  342 ac-caagattacaattactcaagcacacaagcaagagacttc 382  Q
    || ||||||||||||| |||||||||||||||| ||||||||    
T  17769666 acacaagattacaattgctcaagcacacaagcatgagacttc 17769625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 382
Target Start/End: Complemental strand, 19071163 - 19070926
Alignment:
Q  144 ttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcggatataaaagtgatatatagaga 243  Q
    ||||||||||||||||  || ||| | | ||| ||||||||||||  ||  | |||| |||| ||| ||||| |||||||||||||| ||||    ||||    
T  19071163 ttctttttaactaagtttaaagttcagaatctgatagagttcagattctagaacaatgttcacagtcaattgtagcggatataaaagagata----gaga 19071068  T
Q  244 gagataatagaaagacacagaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctagt-cacttacaag-agatttttcactataatt 341  Q
     ||| || | | ||||||| |   ||||||| ||| |||||||||||||||| ||||| |||  ||   | ||||| |||| |||||||||||||||||     
T  19071067 tagagaagaaagagacacaaacaattatcctagttccttccacaatccggaaatagtccagttcccatttgcacttccaaggagatttttcactataatc 19070968  T
Q  342 ac-caagattacaattactcaagcacacaagcaagagacttc 382  Q
    || ||||||||||||| |||||||||||||||| ||||||||    
T  19070967 acacaagattacaattgctcaagcacacaagcatgagacttc 19070926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 385
Target Start/End: Original strand, 1463757 - 1463876
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaa-gagatttttcactataattac-caagattacaattactcaagca 365  Q
    ||||| |||||||||||||||||  ||| ||||| |||| ||    ||||| ||| || ||||||||||||||| |  ||||||||||||| ||||||||    
T  1463757 ttatcatggtttcttccacaatcaagaattagtctagtcccccttgcacttccaaagatatttttcactataatcatgcaagattacaattgctcaagca 1463856  T
Q  366 cacaagcaagagacttccta 385  Q
    ||||||||||||||||||||    
T  1463857 cacaagcaagagacttccta 1463876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 16093703 - 16093815
Alignment:
Q  127 attgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcggatata 226  Q
    |||||||||| ||||||||||||| || | |||  || ||| |  || | |||||||||| ||||||||||||| |||| |||||| ||||||| |||||    
T  16093703 attgtgttagctttttcttcttttaaatttagtacaaagttcagcttatgatagagttcataacctgaagcaatgttcaaagttaagtgcagcgaatata 16093802  T
Q  227 aaagtgatatata 239  Q
    ||||  |||||||    
T  16093803 aaagatatatata 16093815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 306
Target Start/End: Original strand, 13931223 - 13931405
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaa-ctaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcg 220  Q
    |||||| ||||||||||||||||||||||||| ||||||  || ||  | | ||| ||||||||||||  || | ||||| ||||||||  | ||||||     
T  13931223 gttgaactgtgttagatttttcttctttttaaactaagttcaaagtccagagtctgatagagttcagagtctaatgcaatgttcagagtctaatgcagca 13931322  T
Q  221 gatataaaagtgatatatagagagagataatagaaagacacagaatt-ttatcctggtttcttccacaatccggaagtagtcaagtc 306  Q
    ||||   |||| | | ||||| | ||| || ||||||||||| ||   ||||||||||| |||||||||||||||||||||| ||||    
T  13931323 gata---aagtaa-agatagaaacagagaagagaaagacacaaaacagttatcctggttccttccacaatccggaagtagtccagtc 13931405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 45862223 - 45862187
Alignment:
Q  353 aattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||| ||||||||||||||||||||||||||||||||    
T  45862223 aattgctcaagcacacaagcaagagacttcctatgct 45862187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 389
Target Start/End: Original strand, 13953793 - 13953824
Alignment:
Q  358 ctcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||||||||||||    
T  13953793 ctcaagcacacaagcaagagacttcctatgct 13953824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 27172440 - 27172478
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtc 306  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  27172440 ttatcctggttccttccacaatccggaagtagtccagtc 27172478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 381
Target Start/End: Original strand, 4507697 - 4507730
Alignment:
Q  348 attacaattactcaagcacacaagcaagagactt 381  Q
    ||||||||| ||||||||||||||||||||||||    
T  4507697 attacaattgctcaagcacacaagcaagagactt 4507730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 14580716 - 14580749
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtc 301  Q
    ||||||||||| ||||||||||||||||||||||    
T  14580716 ttatcctggttccttccacaatccggaagtagtc 14580749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 19264175 - 19264220
Alignment:
Q  345 aagattacaa-ttactcaagcacacaagcaagagacttcctatgct 389  Q
    |||||||||| || ||||| ||||||||||||||||||||||||||    
T  19264175 aagattacaaattgctcaatcacacaagcaagagacttcctatgct 19264220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 27849714 - 27849747
Alignment:
Q  356 tactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||| ||||||||||    
T  27849714 tactcaagcacacaagcaagagatttcctatgct 27849747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 13953758 - 13953794
Alignment:
Q  353 aattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  13953758 aattgctcaagcacacaagcaagagacttcctttgct 13953794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 22465439 - 22465383
Alignment:
Q  96 tgaaggtgagaaaaacata-gggggatgttgaattgtgttagatttttcttcttttt 151  Q
    ||||||||||||||||| | |||||  ||||||||||||||| ||||||||| ||||    
T  22465439 tgaaggtgagaaaaacacaaggggggggttgaattgtgttagctttttcttcctttt 22465383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 29854607 - 29854665
Alignment:
Q  96 tgaaggtgagaaaaacatagg---gggatgttgaattgtgttagatttttcttcttttt 151  Q
    ||||||||||||||||| | |   |||| ||||||||||||||| ||||||||||||||    
T  29854607 tgaaggtgagaaaaacacaagaaggggaggttgaattgtgttagctttttcttcttttt 29854665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 37412131 - 37412167
Alignment:
Q  353 aattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  37412131 aattgctcaagcacacaagcaagagacttcctttgct 37412167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 47206868 - 47206919
Alignment:
Q  95 ttgaaggtgagaaaaacatagg--gggatgttgaattgtgttagatttttct 144  Q
    |||||||||||||||||||| |  |||| ||||||||||||||| |||||||    
T  47206868 ttgaaggtgagaaaaacataagaagggaggttgaattgtgttagctttttct 47206919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 122 - 382
Target Start/End: Original strand, 14866582 - 14866844
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    ||||||||||||||| ||||||||||||||||||||||| || ||| |  |||  ||||| ||||||| ||||| |||| ||||||||||||||  ||||    
T  14866582 gttgaattgtgttagttttttcttctttttaactaagtccaaagttcagcttccgatagatttcagaatctgaaacaatgttcagagttaattgatgcgg 14866681  T
Q  222 atataaaagtgatatatagagagagataatagaaagacacagaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttaca 321  Q
     ||| | || || | | ||||||||| |  ||| ||| | |  | |||||| |||||  |||||||||| | |||||||| |||| ||| ||||||||||    
T  14866682 gtatgagagagagagagagagagagagag-agagagagagaacaatttatcttggttcattccacaatctgaaagtagtccagtccccttgtcacttaca 14866780  T
Q  322 agagatttttcactataattac---caagattacaattactcaagcacacaagcaagagacttc 382  Q
    ||||||||||||| |||||  |   ||||||||||||| || ||| ||||||||||||||||||    
T  14866781 agagatttttcacgataatatcactcaagattacaattgctgaagtacacaagcaagagacttc 14866844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 338
Target Start/End: Complemental strand, 27747331 - 27747118
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    |||||||||||||| ||||||||| |||||||| ||||| || ||| | ||||| | |||||||||||||||||| ||| |||| |||||| |||| |      
T  27747331 gttgaattgtgttaaatttttcttgtttttaaccaagtccaatgttcagattctgacagagttcagaacctgaagtaatgttcaaagttaagtgcaacaa 27747232  T
Q  222 atataaaagtgatatatagagagagataatagaaagacacagaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttaca 321  Q
    ||||||||  ||  || |||||||||  | ||| | ||| || | ||||||||||||  |||||||||||||||||| || |||| ||| ||||||||||    
T  27747231 atataaaa--gagctaaagagagagaagaaagagacaca-agcaatttatcctggttctttccacaatccggaagtactccagtccccttgtcacttaca 27747135  T
Q  322 agagatttttcactata 338  Q
    | |||||||||| ||||    
T  27747134 aaagatttttcattata 27747118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 33240169 - 33240258
Alignment:
Q  293 gaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcacacaagcaagagactt 381  Q
    ||||||||  |||| ||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  33240169 gaagtagttcagtccccttgtcacttacaagagatttttcactataatcacacaagattacaattgctcaagcacacaagcaagagactt 33240258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 33248090 - 33248179
Alignment:
Q  293 gaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcacacaagcaagagactt 381  Q
    ||||||||  |||| ||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  33248090 gaagtagttcagtccccttgtcacttacaagagatttttcactataatcacacaagattacaattgctcaagcacacaagcaagagactt 33248179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 382
Target Start/End: Complemental strand, 16735663 - 16735547
Alignment:
Q  267 tttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagca 365  Q
    |||||| ||| | ||||||||||| | |||||||  | || ||| ||||||||||||||||||||||||||||| || ||||||||||||| || |||||    
T  16735663 tttatcatggctccttccacaatctgaaagtagtacactctccttgtcacttacaagagatttttcactataatcacacaagattacaattgcttaagca 16735564  T
Q  366 cacaagcaagagacttc 382  Q
    |||||||||||||||||    
T  16735563 cacaagcaagagacttc 16735547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 267 - 382
Target Start/End: Complemental strand, 18820344 - 18820227
Alignment:
Q  267 tttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagag-atttttcactataattac-caagattacaattactcaagc 364  Q
    |||||| |||||||||||||||||  ||||||||| |||| ||| ||||||||||||||  ||||| |||||||| || ||||||||||||   ||||||    
T  18820344 tttatcatggtttcttccacaatctagaagtagtccagtccccttgtcacttacaagagttttttttactataatcacacaagattacaatagatcaagc 18820245  T
Q  365 acacaagcaagagacttc 382  Q
    |||||||||||| |||||    
T  18820244 acacaagcaagatacttc 18820227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 390
Target Start/End: Complemental strand, 40203047 - 40202936
Alignment:
Q  280 cttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcacacaagcaagaga 378  Q
    ||||||||||  ||| ||||||  ||| ||| |||||||||| |||||||||||||||||| || |||||||||||||  |||||||||||| ||| |      
T  40203047 cttccacaatatggatgtagtccggtccccttgtcacttacatgagatttttcactataatcacacaagattacaattgttcaagcacacaaacaaaatg 40202948  T
Q  379 cttcctatgcta 390  Q
    ||||||||||||    
T  40202947 cttcctatgcta 40202936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 228
Target Start/End: Complemental strand, 16735846 - 16735740
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    ||||||||||||||| ||||||||||||||||||||||  ||  || |  |||| |||||||||||||||||||| ||| || |||| ||| || |||||    
T  16735846 gttgaattgtgttagttttttcttctttttaactaagttcaaatttcagcttctgatagagttcagaacctgaagaaatgtttagagctaagtgtagcgg 16735747  T
Q  222 atataaa 228  Q
     ||||||    
T  16735746 gtataaa 16735740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 25917938 - 25918025
Alignment:
Q  123 ttgaattgtgttagatttttcttcttttt-aactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagt 209  Q
    |||||||||||||| |||||||||||||| ||||||||| |  ||| ||| ||| ||| |||||||| ||||||||||| ||||||||    
T  25917938 ttgaattgtgttagctttttcttctttttaaactaagtctagagttcaaagtctgataaagttcagatcctgaagcaatgttcagagt 25918025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 224
Target Start/End: Complemental strand, 40203219 - 40203117
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    ||||| || |||||| ||||||||||||||||||||||  |  ||| ||| ||| ||||||||||||  ||||| |||| |||||||| || ||||||||    
T  40203219 gttgagttatgttagttttttcttctttttaactaagttcagagttcaaaatctgatagagttcagagtctgaaacaatgttcagagtcaaatgcagcgg 40203120  T
Q  222 ata 224  Q
    |||    
T  40203119 ata 40203117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 30461980 - 30462026
Alignment:
Q  325 gatttttcactataattac-caagattacaattactcaagcacacaa 370  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  30461980 gatttttcactataattacacaagattacaattgctcaagcacacaa 30462026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 23185234 - 23185178
Alignment:
Q  95 ttgaaggtgagaaaaacatagggggatgttgaattgtgttagatttttcttcttttt 151  Q
    |||||||| ||||||||| | ||||  ||||||||||||||| ||||||||||||||    
T  23185234 ttgaaggtaagaaaaacacaagggggggttgaattgtgttagctttttcttcttttt 23185178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 23596497 - 23596441
Alignment:
Q  95 ttgaaggtgagaaaaacatagggggatgttgaattgtgttagatttttcttcttttt 151  Q
    |||||||| ||||||||| | ||||  ||||||||||||||| ||||||||||||||    
T  23596497 ttgaaggtaagaaaaacacaagggggggttgaattgtgttagctttttcttcttttt 23596441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 22797603 - 22797700
Alignment:
Q  95 ttgaaggtgagaaaaacatagg--gggatgttgaattgtgttagatttttcttcttttt--aactaagtcaaaggttaaaattctaatagagttcaga 188  Q
    |||||||||||||||||| | |  |||  ||||||||||||||| ||||||||||||||  ||||||||| || ||| | | ||| ||||||||||||    
T  22797603 ttgaaggtgagaaaaacacaagaaggggggttgaattgtgttagttttttcttctttttaaaactaagtctaatgttcatagtctgatagagttcaga 22797700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 968179 - 968141
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtc 306  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  968179 ttatcctggttccttccacaatccggaagtagtccagtc 968141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 1041702 - 1041740
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtc 306  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  1041702 ttatcctggttccttccacaatccggaagtagtccagtc 1041740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 16934140 - 16934078
Alignment:
Q  328 ttttcactataattaccaa-gattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||| || || |||||||| | |||||| |||||| ||||||||||||||||||    
T  16934140 ttttcactataatcactaatgattacaaatgctcaaggacacaaccaagagacttcctatgct 16934078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 21911442 - 21911409
Alignment:
Q  356 tactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||| ||||||||||    
T  21911442 tactcaagcacacaagcaagagatttcctatgct 21911409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 27939479 - 27939543
Alignment:
Q  326 atttttcactataattaccaa-gattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||| ||  | |||||||||| ||||| |||||||||||| || ||||||||||    
T  27939479 atttttcactataatcacagacgattacaattgctcaaacacacaagcaagggatttcctatgct 27939543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 267 - 389
Target Start/End: Original strand, 17399 - 17522
Alignment:
Q  267 tttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagca 365  Q
    ||||||||||||  |||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||     
T  17399 tttatcctggttctttccacaatccggaagcagtctagtccccttgtcacttacaagagatttttcactataatcacacaagattacaattgctcaagcg 17498  T
Q  366 cacaagcaagagacttcctatgct 389  Q
    |||||  ||||||||| |||||||    
T  17499 cacaaaaaagagactttctatgct 17522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 17269 - 17370
Alignment:
Q  123 ttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgga 222  Q
    |||||||||||||| |||||||| | || ||||||||| || ||| |  |||| ||||| |||||||| |||||| || |||||||| || |||||||||    
T  17269 ttgaattgtgttagctttttcttgtcttaaactaagtccaaagttcagcttctgatagatttcagaacttgaagcgatgttcagagtaaagtgcagcgga 17368  T
Q  223 ta 224  Q
    ||    
T  17369 ta 17370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 122 - 389
Target Start/End: Complemental strand, 5902412 - 5902143
Alignment:
Q  122 gttgaattgtgttagattt-----ttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgc 216  Q
    ||||||||||||||| |||     |||||||||||||| ||||| || ||| |  |||| ||||||||||||| ||||| |||| || |||||||| |||    
T  5902412 gttgaattgtgttagttttttttcttcttctttttaacaaagtccaaagttcagcttctgatagagttcagaatctgaatcaatgtttagagttaaatgc 5902313  T
Q  217 agcggatataaaagtgatatatagagagagataatagaaagacacagaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcac 316  Q
    ||||||||||||   || | ||||||  ||| || |||||| |||| |   |||| || ||| ||| |||| ||| ||||||||| |||| | | |||||    
T  5902312 agcggatataaa---gagacatagag-tagaaaagagaaaggcacaaacaattatactagttcctttcacattccagaagtagtccagtcccattgtcac 5902217  T
Q  317 ttacaagagatttttcactataattac-caagattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||||| |||||||||||||| ||||| |||||||||||||  |||||||||||||||||| |||||| |||||    
T  5902216 ttacaatagatttttcactattattacacaagattacaattgttcaagcacacaagcaagaaacttccaatgct 5902143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 382
Target Start/End: Original strand, 15193027 - 15193280
Alignment:
Q  127 attgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcggatata 226  Q
    |||||||||| |||||||| |||| |||||||||  | ||| |  |||| ||||| || ||||||| ||||||| ||||||||||| ||| || ||||      
T  15193027 attgtgttagctttttcttgttttaaactaagtctgaagttcagcttctgatagattttagaacctaaagcaatgttcagagttaagtgcggcagataag 15193126  T
Q  227 aaagtgatatatagagagagataatagaaagacacagaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagaga 326  Q
    ||||  |  || |||||||||  | ||| | ||| | ||||| ||||||||| |||||| ||| ||||||||||| |||| ||| ||||||||||||| |    
T  15193127 aaag--aactaaagagagagaacaaagagacacaaacaattt-atcctggttccttccataattcggaagtagtccagtccccttgtcacttacaagaaa 15193223  T
Q  327 tttttcactataattac-caagattacaattactcaagcacacaagcaagagacttc 382  Q
    ||||| |||||||| || ||||||||||||| || ||||||||||| |||| |||||    
T  15193224 ttttttactataatcacacaagattacaattgcttaagcacacaagaaagacacttc 15193280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 378
Target Start/End: Complemental strand, 32469337 - 32469087
Alignment:
Q  124 tgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcggat 223  Q
    ||||||||||||| |||||||  ||||||| | ||||| | ||| || |||| |||||||||| ||||||||||||| |||| |||||| |||| |||||    
T  32469337 tgaattgtgttagttttttctcgtttttaattgagtcagaagttcaacttctgatagagttcaaaacctgaagcaatgttcacagttaagtgcaacggat 32469238  T
Q  224 ataaaagtgatatatagagagagataatagaaagacacagaat---tttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttac 320  Q
    |||||||    | ||||||| |||    ||||||| ||| |||   |||||| ||||| ||||| ||||||| |||||||  ||||  || || |||| |    
T  32469237 ataaaag----agatagagaaaga----agaaagagacacaatcaatttatcatggttccttccgcaatccgaaagtagttcagtcctcttgtaacttgc 32469146  T
Q  321 aagagatttttcactataattac-caagattacaattactcaagcacacaagcaagaga 378  Q
    |||| |||||| |||||||| || ||||||||||||  ||||||||||||||| |||||    
T  32469145 aagaaattttttactataatcactcaagattacaatggctcaagcacacaagccagaga 32469087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 10329203 - 10329094
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||   | ||| ||||||| ||||  |||||||||| |||  |||||||||||||      
T  10329203 gttgaattgtgttagctttttcttctttttaactaagtccaaggttttgactctgatagagtccagactctgaagcaattttctaagttaattgcagcat 10329104  T
Q  222 atataaaagt 231  Q
    ||||||||||    
T  10329103 atataaaagt 10329094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 378
Target Start/End: Complemental strand, 10329019 - 10328915
Alignment:
Q  275 ggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcacacaagca 373  Q
    |||| |||||||||||| |||||| || ||||  || || |||| ||||||||||||||||||||| || ||||||||||| | || |||||||||||||    
T  10329019 ggttccttccacaatccagaagtaatccagtcctcttgtaacttgcaagagatttttcactataatcacacaagattacaaatgctaaagcacacaagca 10328920  T
Q  374 agaga 378  Q
    |||||    
T  10328919 agaga 10328915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 381
Target Start/End: Original strand, 24619085 - 24619200
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaa-gagatttttcactataattac-caagattacaattactcaagca 365  Q
    |||||||| || |||||| |||  |||||||||| |||| || |  ||||| ||| ||||||||||||| |||| || ||||||||||||| ||||||||    
T  24619085 ttatcctgattccttccataatttggaagtagtctagtcccccatgcacttccaatgagatttttcactttaatcacacaagattacaattgctcaagca 24619184  T
Q  366 cacaagcaagagactt 381  Q
    ||||||||||||||||    
T  24619185 cacaagcaagagactt 24619200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 23087166 - 23087226
Alignment:
Q  323 gagatttttcactataattac-caagattacaattactcaagcacacaagcaagagacttc 382  Q
    |||||||||||||||||| || ||| |||| |||| ||||||||||||| |||||||||||    
T  23087166 gagatttttcactataatcacacaatattataattgctcaagcacacaaacaagagacttc 23087226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 24618887 - 24618954
Alignment:
Q  96 tgaaggtgagaaaaacatagg--gggatgttgaattgtgttagatttttcttctttttaactaagtca 161  Q
    ||||||||||||||||| | |  |||  ||||||||||||||| || |||||||||||||||||||||    
T  24618887 tgaaggtgagaaaaacacaagaagggcggttgaattgtgttagcttattcttctttttaactaagtca 24618954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 13890058 - 13890089
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaa 153  Q
    ||||||||||||||||||||||||||||||||    
T  13890058 gttgaattgtgttagatttttcttctttttaa 13890089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 13977949 - 13977894
Alignment:
Q  328 ttttcactataattaccaa-gattacaattactcaagcacacaagcaagagacttc 382  Q
    ||||||||||||| || || |||||||| | |||||||||||||||||||||||||    
T  13977949 ttttcactataatcactaaagattacaaatgctcaagcacacaagcaagagacttc 13977894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 19665567 - 19665617
Alignment:
Q  101 gtgagaaaaacatagggggatgttgaattgtgttagatttttcttcttttt 151  Q
    |||||||||||| | ||||| |||| |||||||||||||||||||| ||||    
T  19665567 gtgagaaaaacacaaggggaggttggattgtgttagatttttcttcgtttt 19665617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 9266799 - 9266832
Alignment:
Q  356 tactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||||||| ||||||    
T  9266799 tactcaagcacacaagcaagagacttcatatgct 9266832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 357 - 389
Target Start/End: Original strand, 7222032 - 7222064
Alignment:
Q  357 actcaagcacacaagcaagagacttcctatgct 389  Q
    |||||||||||||||||||||| ||||||||||    
T  7222032 actcaagcacacaagcaagagatttcctatgct 7222064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 13693025 - 13693125
Alignment:
Q  126 aattgtgttagatttttcttcttttt-aactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagt-taattgcagcggat 223  Q
    |||||||||||||||||||| ||||| ||||||||| || ||| ||| ||  ||||||||||||  ||  | |||| |||||||| ||||||||| ||||    
T  13693025 aattgtgttagatttttcttatttttaaactaagtccaaagttcaaagtccgatagagttcagattcttgaacaatgttcagagtctaattgcagtggat 13693124  T
Q  224 a 224  Q
    |    
T  13693125 a 13693125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 389
Target Start/End: Original strand, 1525 - 1788
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    |||||||||| |||||||||| ||  ||  ||||||||| || ||  |  |||| ||||||||||||||||||||||||||||| |||||| | |||| |    
T  1525 gttgaattgttttagatttttattgcttaaaactaagtccaaagtccagcttctgatagagttcagaacctgaagcaatattcatagttaaattcagcag 1624  T
Q  222 atataaaagtgatatatagagagagataatagaaagacacagaattttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttaca 321  Q
    ||||||||| ||||      |||||| || | | |||||||     | |||| |||| |||| | ||||| ||||||||  |||| ||| ||||||||||    
T  1625 atataaaagagata------gagagagaagaaagagacacaagcaatgatccgggttccttctataatccagaagtagtatagtccccttgtcacttaca 1718  T
Q  322 agagattttt-cactataattac-caagattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||||||||| ||||||||| || ||||||||||||| || ||| ||||||||||| |||||||||||||    
T  1719 agagattttttcactataatcacacaagattacaattgcttaagaacacaagcaagcgacttcctatgct 1788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 284 - 382
Target Start/End: Original strand, 13242664 - 13242763
Alignment:
Q  284 cacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataattac-caagattacaattactcaagcacacaagcaagagacttc 382  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| || ||||||||||||| || | ||| |||||||||| |||||    
T  13242664 cacaatccggaagtagtcaagtccccttgtcacttacaagagatttttcacaataatcacacaagattacaattgcttaggcatacaagcaagaaacttc 13242763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 16739827 - 16739900
Alignment:
Q  267 tttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaagagatttttcactataat 340  Q
    |||||||| |||||||||||||||||||||||||| |||| |||  ||||||||||||||||||||||||||||    
T  16739827 tttatcctagtttcttccacaatccggaagtagtccagtccccttttcacttacaagagatttttcactataat 16739900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 24471290 - 24471173
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattgcagcgg 221  Q
    ||||||||||||||  ||||||||||||||||||||||  || ||| | | ||| ||||| || |||  ||| | |||| |||||||| |||||| ||||    
T  24471290 gttgaattgtgttaactttttcttctttttaactaagttcaaagttcagagtctgatagaattaagattctggaacaatgttcagagtcaattgcggcgg 24471191  T
Q  222 atataaaagtgatatata 239  Q
    ||||||||| ||||||||    
T  24471190 atataaaagagatatata 24471173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 31720471 - 31720382
Alignment:
Q  122 gttgaattgtgttagatttttcttctttttaactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagtta 211  Q
    ||||||||||||||  ||||||||||||||||| ||||| || ||| || || | ||||| ||||||||||||| |||| ||||||||||    
T  31720471 gttgaattgtgttaactttttcttctttttaaccaagtccaaagttcaacttttgatagaattcagaacctgaatcaattttcagagtta 31720382  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 382
Target Start/End: Original strand, 14757752 - 14757867
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaa-gagatttttcactataattac-caagattacaattactcaagca 365  Q
    ||||| ||||| |||||||||| ||||||||||| |||| ||    ||||| ||| |||||||||||||||||| || ||||||||||| | |||||||     
T  14757752 ttatcatggttccttccacaattcggaagtagtccagtcccccttgcacttccaaggagatttttcactataatcacacaagattacaaatgctcaagc- 14757850  T
Q  366 cacaagcaagagacttc 382  Q
    |||||||||||||||||    
T  14757851 cacaagcaagagacttc 14757867  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 31720333 - 31720225
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtcgcctagtcacttacaa-gagatttttcactataattac-caagattacaattactcaagca 365  Q
    |||||||||||  |||||||| | |||||||||  |||| |||  ||||||| || |||||||||||||||||| || |||||||||||||  |||||||    
T  31720333 ttatcctggttcattccacaacctggaagtagttcagtctccttatcacttagaatgagatttttcactataatcacacaagattacaattgttcaagca 31720234  T
Q  366 cacaagcaa 374  Q
    |||||||||    
T  31720233 cacaagcaa 31720225  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 12183564 - 12183494
Alignment:
Q  312 gtcacttacaagagatttttcactataattac-caagattacaattactcaagcacacaagcaagagactt 381  Q
    |||||||||||||||||||| |||||||| |  ||||||||||||| ||||  ||||||||||||||||||    
T  12183564 gtcacttacaagagattttttactataatcatacaagattacaattgctcagccacacaagcaagagactt 12183494  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 382
Target Start/End: Original strand, 30372788 - 30372843
Alignment:
Q  328 ttttcactataattac-caagattacaattactcaagcacacaagcaagagacttc 382  Q
    |||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||    
T  30372788 ttttcactataattacacaaaattacaattgctcaaccacacaagcaagagacttc 30372843  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 15551235 - 15551294
Alignment:
Q  96 tgaaggtgagaaaaacatagg--gggatgttgaattgtgttagatttttcttctttttaa 153  Q
    ||||||||||||||||| | |  |||  ||||||||||||||||||||||||||||||||    
T  15551235 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttagatttttcttctttttaa 15551294  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 24398046 - 24398107
Alignment:
Q  94 cttgaaggtgagaaaaaca---tagggggatgttgaattgtgttagatttttcttctttttaa 153  Q
    |||||||||||| ||||||   || ||||| ||||||||||||||||||||||||||||||||    
T  24398046 cttgaaggtgagtaaaacacaataagggga-gttgaattgtgttagatttttcttctttttaa 24398107  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 25777553 - 25777490
Alignment:
Q  93 ccttgaaggtgagaaaaacatagg--gggatgttgaattgtgttagatttttcttctttttaac 154  Q
    ||||||| |||||||||||| | |  | ||||||||||||||||||||||||||| ||||||||    
T  25777553 ccttgaatgtgagaaaaacacaagaagagatgttgaattgtgttagatttttcttatttttaac 25777490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 15551398 - 15551436
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtc 306  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  15551398 ttatcctggttccttccacaatccggaagtagtccagtc 15551436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 17047113 - 17047151
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtc 306  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  17047113 ttatcctggttccttccacaatccggaagtagtccagtc 17047151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 17317441 - 17317394
Alignment:
Q  96 tgaaggtgagaaaaacatagggggatgttgaattgtgttagatttttctt 145  Q
    ||||||||||||||||| ||||||  ||||||||||||||| ||||||||    
T  17317441 tgaaggtgagaaaaacacaggggg--gttgaattgtgttagctttttctt 17317394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 22292421 - 22292459
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtcaagtc 306  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  22292421 ttatcctggttccttccacaatccggaagtagtccagtc 22292459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 24471059 - 24471021
Alignment:
Q  344 caagattacaattactcaagcacacaagcaagagacttc 382  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  24471059 caagattataattgctcaagcacacaagcaagagacttc 24471021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 24481104 - 24481066
Alignment:
Q  344 caagattacaattactcaagcacacaagcaagagacttc 382  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  24481104 caagattataattgctcaagcacacaagcaagagacttc 24481066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Original strand, 17063757 - 17063790
Alignment:
Q  268 ttatcctggtttcttccacaatccggaagtagtc 301  Q
    ||||||||||| ||||||||||||||||||||||    
T  17063757 ttatcctggttccttccacaatccggaagtagtc 17063790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 4986 - 5064
Alignment:
Q  312 gtcacttacaagagatttttcactataattac-caagattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||| ||||||||||||||||||||| |  ||||||||||||| |||||| |||||||||||||||||||||||||    
T  4986 gtcacttgcaagagatttttcactataatcatacaagattacaattgctcaaggacacaagcaagagacttcctatgct 5064  T

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Target: scaffold0211 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 389
Target Start/End: Complemental strand, 57 - 26
Alignment:
Q  358 ctcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||||||||||||    
T  57 ctcaagcacacaagcaagagacttcctatgct 26  T

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Target: scaffold0084 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 389
Target Start/End: Complemental strand, 968 - 937
Alignment:
Q  358 ctcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||||||||||||    
T  968 ctcaagcacacaagcaagagacttcctatgct 937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 16136 - 16198
Alignment:
Q  328 ttttcactataattaccaa-gattacaattactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||| || || |||||||| | |||||| |||||| ||||||||||||||||||    
T  16136 ttttcactataatcactaatgattacaaatgctcaaggacacaaccaagagacttcctatgct 16198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 4594 - 4561
Alignment:
Q  356 tactcaagcacacaagcaagagacttcctatgct 389  Q
    ||||||||||||||||||||||| ||||||||||    
T  4594 tactcaagcacacaagcaagagatttcctatgct 4561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 4634 - 4598
Alignment:
Q  347 gattacaattactcaagcacacaagcaagagacttcc 383  Q
    |||||||| | ||||||||||||||||||||||||||    
T  4634 gattacaaatgctcaagcacacaagcaagagacttcc 4598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0908 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0908
Description:

Target: scaffold0908; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 4514 - 4478
Alignment:
Q  353 aattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  4514 aattgctcaagcacacaagcaagagacttcctttgct 4478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 4020 - 3984
Alignment:
Q  347 gattacaattactcaagcacacaagcaagagacttcc 383  Q
    |||||||| | ||||||||||||||||||||||||||    
T  4020 gattacaaatgctcaagcacacaagcaagagacttcc 3984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 224
Target Start/End: Complemental strand, 4143 - 4035
Alignment:
Q  117 gggatgttgaattgtgttagatttttcttcttttt-aactaagtcaaaggttaaaattctaatagagttcagaacctgaagcaatattcagagttaattg 215  Q
    |||| |||||||||||||   |||||||||||||| ||||||||  |||||| ||| ||| |||||||||| |  | | |||||| ||||||||  | ||    
T  4143 gggaggttgaattgtgttgactttttcttctttttaaactaagttcaaggttcaaagtctgatagagttcaaattcaggagcaatgttcagagtctaatg 4044  T
Q  216 cagcggata 224  Q
    |||||||||    
T  4043 cagcggata 4035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 2399 - 2363
Alignment:
Q  353 aattactcaagcacacaagcaagagacttcctatgct 389  Q
    |||| |||||||||||| |||||||||||||||||||    
T  2399 aattgctcaagcacacaggcaagagacttcctatgct 2363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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