View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16147_low_4 (Length: 371)

Name: NF16147_low_4
Description: NF16147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16147_low_4
NF16147_low_4
[»] chr8 (3 HSPs)
chr8 (99-263)||(37264019-37264183)
chr8 (1-55)||(37264181-37264235)
chr8 (328-356)||(37263916-37263944)
[»] chr6 (1 HSPs)
chr6 (151-216)||(6033248-6033313)
[»] chr7 (1 HSPs)
chr7 (186-238)||(39773442-39773494)
[»] chr4 (1 HSPs)
chr4 (186-262)||(49272719-49272795)
[»] scaffold0274 (1 HSPs)
scaffold0274 (186-236)||(5232-5281)
[»] scaffold0271 (1 HSPs)
scaffold0271 (186-236)||(4009-4058)
[»] chr1 (2 HSPs)
chr1 (186-238)||(12900959-12901011)
chr1 (186-238)||(46502868-46502920)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 99 - 263
Target Start/End: Complemental strand, 37264183 - 37264019
Alignment:
Q  99 gggcaggttcttgtttccacataaatannnnnnngactttttgtcgatgggataatggatgaatgcaatgaaatataacacaaatagtgaaataactttg 198  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37264183 gggcaggttcttgtttccacataaatatttttttgactttttgtcgatgggataatggatgaatgcaatgaaatataacacaaatagtgaaataactttg 37264084  T
Q  199 tattgagttcactgaattacacaatacaagagaaattgatgggatacagtgcaaatggacaacta 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37264083 tattgagttcactgaattacacaatacaagagaaattgatgggatacagtgcaaatggacaacta 37264019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37264235 - 37264181
Alignment:
Q  1 ttaatgacaatttcacactaagaataaattaatcccaaactcattatgttaaggg 55  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37264235 ttaatgacaatttcatactaagaataaattaatcccaaactcattatgttaaggg 37264181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 356
Target Start/End: Complemental strand, 37263944 - 37263916
Alignment:
Q  328 ttttcatcatccatgtctttctaatttat 356  Q
    |||||||||||||||||||||||||||||    
T  37263944 ttttcatcatccatgtctttctaatttat 37263916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 6033248 - 6033313
Alignment:
Q  151 taatggatgaatgcaatgaaatataacacaaatagtgaaataactttgtattgagttcactgaatt 216  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6033248 taattgatgaatgcaatgaaatataacacaaatagtgaaataactttgtattgagttcagtgaatt 6033313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 39773494 - 39773442
Alignment:
Q  186 tgaaataactttgtattgagttcactgaattacacaatacaagagaaattgat 238  Q
    ||||||||||||||||||| |||||| ||  | ||||||||||||||||||||    
T  39773494 tgaaataactttgtattgaattcactaaaaaatacaatacaagagaaattgat 39773442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 49272795 - 49272719
Alignment:
Q  186 tgaaataactttgtattgagttcactgaattacacaatacaagagaaattgatgggatacagtgcaaatggacaact 262  Q
    ||||||| ||||| ||||| |||| ||||  |||||||||||||||||||||| | ||| |||| |||| |||||||    
T  49272795 tgaaatagctttgcattgaattcaatgaaaaacacaatacaagagaaattgatcgaataaagtgtaaattgacaact 49272719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 5232 - 5281
Alignment:
Q  186 tgaaataactttgtattgagttcactgaattacacaatacaagagaaattg 236  Q
    ||||||||||||||||||| |||||| ||  ||||||||||||||||||||    
T  5232 tgaaataactttgtattgaattcact-aaaaacacaatacaagagaaattg 5281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 4058 - 4009
Alignment:
Q  186 tgaaataactttgtattgagttcactgaattacacaatacaagagaaattg 236  Q
    ||||||||||||||||||| |||||| ||  ||||||||||||||||||||    
T  4058 tgaaataactttgtattgaattcact-aaaaacacaatacaagagaaattg 4009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 12901011 - 12900959
Alignment:
Q  186 tgaaataactttgtattgagttcactgaattacacaatacaagagaaattgat 238  Q
    |||||| |||||||||||| |||| ||||  ||||||||||||||||| ||||    
T  12901011 tgaaatgactttgtattgaattcaatgaaaaacacaatacaagagaaagtgat 12900959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 46502920 - 46502868
Alignment:
Q  186 tgaaataactttgtattgagttcactgaattacacaatacaagagaaattgat 238  Q
    ||||||| || |||||||| |||||| ||  ||||||||||||||||||||||    
T  46502920 tgaaatagctctgtattgaattcactaaaaaacacaatacaagagaaattgat 46502868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University