View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16147_low_6 (Length: 284)
Name: NF16147_low_6
Description: NF16147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16147_low_6 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 177883 - 177618
Alignment:
| Q |
1 |
aacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagttaattaaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
177883 |
aacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttctaggaaagctttgtagttaattaaatca |
177784 |
T |
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| Q |
101 |
nnnnnnncttctatgcgattccnnnnnnnntgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggataggtccaattg |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177783 |
tttttttcttctatgcgattccaaaaaaaatgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggataggtccaattg |
177684 |
T |
|
| Q |
201 |
atatgagcagaggtgtatatgcctcttctttcccattcaaaagaatagtaggaaccttgtagatac |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
177683 |
atatgagcagaggtgtatatgcctcttctttcccattcaaaagaatagtagtaacattgtagatac |
177618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 606573 - 606308
Alignment:
| Q |
1 |
aacaaattgttcatggctgatatcaggaaacttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagttaattaaatca |
100 |
Q |
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||||||||||| ||||| |||||| ||| | || |||||||| ||||||||||| | ||||||||||| ||||||| ||||||||| ||||||||| |
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| T |
606573 |
aacaaattgtttctggctaatatcaacaaaaattttctggtaacagtggcgaatattatgttcttcttgttcaaggaaagttttgtagttcattaaatca |
606474 |
T |
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| Q |
101 |
nnnnnnncttctatgcgattccnnnnnnnntgaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggataggtccaattg |
200 |
Q |
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| T |
606473 |
cttttttggtctaggcgattccaaaagaaatgaaaatatctctgtttgtgttcttgcatatcctcatgtgttttgttgctatggtggataggtccaattg |
606374 |
T |
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| Q |
201 |
atatgagcagaggtgtatatgcctcttctttcccattcaaaagaatagtaggaaccttgtagatac |
266 |
Q |
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| T |
606373 |
atatgagtagaggtgtataatcttcttccttcacattcaaaagagtagtaggaaccttgtagatac |
606308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 266
Target Start/End: Original strand, 115935 - 116169
Alignment:
| Q |
32 |
ttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagttaattaaatcannnnnnncttctatgcgattccnnnnnnnnt |
131 |
Q |
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|||||||||||||| |||| || |||| ||||||||||| |||||| |||||||||| || |||||| |||| |||||||| | |
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| T |
115935 |
ttcttttggtaacatcggcgtattttttgctcttcttgttgaaggaaaactttgtagttcatgaaatcacttttcttgtctaggcgattccaaaaataat |
116034 |
T |
|
| Q |
132 |
gaaaatatctttgtttatgctcttgcatttcctcaagttttttgttgttatggtggataggtccaattgatatgagcagaggtgtatatgcctcttcttt |
231 |
Q |
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| T |
116035 |
ggaaatatctatgtttgtactcttgcatttcctcaagtctttcgttgttatggtggataggtccaatagatatgattagaggtgtataagcctcctcttt |
116134 |
T |
|
| Q |
232 |
cccattcaaaagaatagtaggaaccttgtagatac |
266 |
Q |
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| T |
116135 |
cacattcaaaagagtagctggaactttgtagatac |
116169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 10426 - 10559
Alignment:
| Q |
131 |
tgaaaatatctttgtttatgctcttgcatttcctcaagttttttgt---tgttatggtggataggtccaattgatatgagcagaggtgtatatgcctctt |
227 |
Q |
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|||||||| || ||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||| || | |
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| T |
10426 |
tgaaaatacctatgtttgtattcttgcatttcctcaagttttttgttgttgttatggtggataggaccaatggatatcagcagaggtgtatatgcttcat |
10525 |
T |
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| Q |
228 |
ctttcccattcaaaagaatagtaggaaccttgta |
261 |
Q |
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| ||| | ||||| | | |||||||||||||||| |
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| T |
10526 |
ccttcaccttcaacaaagtagtaggaaccttgta |
10559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 23880 - 24013
Alignment:
| Q |
131 |
tgaaaatatctttgtttatgctcttgcatttcctcaagttttttgt---tgttatggtggataggtccaattgatatgagcagaggtgtatatgcctctt |
227 |
Q |
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|||||||| || ||||| | ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||| || | |
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| T |
23880 |
tgaaaatacctatgtttgtattcttgcatttcctcaagttttttgttgttgttatggtggataggaccaatggatatcagcagaggtgtatatgcttcat |
23979 |
T |
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| Q |
228 |
ctttcccattcaaaagaatagtaggaaccttgta |
261 |
Q |
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| ||| | ||||| | | |||||||||||||||| |
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| T |
23980 |
ccttcaccttcaacaaagtagtaggaaccttgta |
24013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 37438676 - 37438768
Alignment:
| Q |
152 |
tcttgcatttcctcaagttttttgttgttatggtggataggtccaattgatatgagcagaggtgtatatgcctcttctttcccattcaaaaga |
244 |
Q |
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||||| |||||||||||||||||||||||||||||||| | | ||||||||| || ||| ||||||| ||||||||||| | ||||||||| |
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| T |
37438676 |
tcttgtatttcctcaagttttttgttgttatggtggattgatacaattgatacaagtagaagtgtataatcctcttctttcaccttcaaaaga |
37438768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 37438567 - 37438635
Alignment:
| Q |
32 |
ttcttttggtaacaatggcgaatatttttctcttcttgttccaggaaagctttgtagttaattaaatca |
100 |
Q |
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|||||||||||||| |||| ||||||| |||||||||||| | ||| | |||| |||| ||||||||| |
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| T |
37438567 |
ttcttttggtaacatcggcgtatattttgctcttcttgttcaacgaaggttttgcagttcattaaatca |
37438635 |
T |
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