View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16147_low_7 (Length: 238)
Name: NF16147_low_7
Description: NF16147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16147_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 33463782 - 33463569
Alignment:
| Q |
18 |
ttagggaaccaaacattccttacttaaggctaaagggattagagaaaagaccgttaaatgggaaaagatcaatgagtccaaaaagtaaagatgttgtact |
117 |
Q |
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| T |
33463782 |
ttagggaaccaaacattccttacttaagg-------gataagagaaaagaccgttaaatgggaaaagatcaatgagtccaaaaagtaaagatgttgtact |
33463690 |
T |
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| Q |
118 |
atcacatgtcgtgtatgaggacaaaaattctgttttgtaaaggagagacattaaactctagttgcacctccaaccaaagctaaccgccattttagattct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33463689 |
atcacatgtcgtgtatgaggacaaaaattctgttttgtaaaggagagacattaaactctagttgcacctccaaccaaagctaaccgccattttagattct |
33463590 |
T |
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| Q |
218 |
caaagttagtcaagattgatc |
238 |
Q |
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| T |
33463589 |
caaagttagtcaagattgatc |
33463569 |
T |
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