View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16148_low_1 (Length: 575)
Name: NF16148_low_1
Description: NF16148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16148_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Original strand, 21115396 - 21115934
Alignment:
| Q |
8 |
gagcacagatggaaggtcctgataaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatg |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21115396 |
gagcacacatggaaggtcctgataaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatg |
21115495 |
T |
|
| Q |
108 |
aatcttggacattattccaaaagtttgcaagaattgatgacgaatactccaagttattggatggtgagcaaagggaagtctgcaatgagggtaatggact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |||||||||| |
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| T |
21115496 |
aatcttggacattattccaaaagtttgcaagaattgatgacgaatactccaagttattggatggtgtgccacgggaagtctgcaatgagtgtaatggact |
21115595 |
T |
|
| Q |
208 |
tcccttatcaatcaaaactatagggtcgtccttaaaaggaaggcatgaaattgagttgtggcagcaggcgtttgataagttgagggattcaaaagcatct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
21115596 |
tcccttatcaatcaaaactatagggtcgtccttaaaaggaaggcatgaaattgagttgtggcagcaggcgttagataagttgagggattcaaaggcatcc |
21115695 |
T |
|
| Q |
308 |
aatgatgaaggaggagtaaggactactttaagttgccttaaattaagctatgattatttgcaaaggcagcacgcacaattgctcttaatgatgtgtactc |
407 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||||||||||| ||||||| |
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| T |
21115696 |
aatgatgaaggaggagtgaggactactttaagttgccttaaattaagctatgattatttgcaaaggcagtacacacagctactcttaatgatttgtactc |
21115795 |
T |
|
| Q |
408 |
tttttccagaagactatcacataccaacagaagatttgatgaggtatgcatttggactaggtgcgggagaaagattatcgttacaatcaatgaggaggtt |
507 |
Q |
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| T |
21115796 |
tttttccagaagactatcacatcccaacagaagatttgatgaggtttgcatttggactaggtatgggagaaaaattatcattacagtcaatgaggagctt |
21115895 |
T |
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| Q |
508 |
gattcaagcagacataaacaaactcttagattcttgttt |
546 |
Q |
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| T |
21115896 |
gattcaagcagacataaacaaactcttcgattcttgttt |
21115934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 21122845 - 21122967
Alignment:
| Q |
30 |
taaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatgaatcttggacattattccaaaa |
129 |
Q |
| |
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||||||| |||| |||| |||| |||| | |||| | ||||| |||| ||||||||||||||||||||| |||||||||| |||||||| |||||||| |
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| T |
21122845 |
taaccacacgtattgagaatgtttgtattttaatgaattgtcacaagatgattcatttggggctcttgtccaaagatgaatcctggacattcttccaaaa |
21122944 |
T |
|
| Q |
130 |
gtttgcaagaattgatgacgaat |
152 |
Q |
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| T |
21122945 |
gcttgcagtaattgatgacgaat |
21122967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 21622470 - 21622570
Alignment:
| Q |
30 |
taaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatgaatcttggacattattccaaaa |
129 |
Q |
| |
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|||||||||||||| |||| || || || |||||||||||||||||||| |||||| | | ||| || ||| |||||||||| ||||| || |||||||| |
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| T |
21622470 |
taaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctggactttgttccaaaa |
21622569 |
T |
|
| Q |
130 |
g |
130 |
Q |
| |
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| |
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|
| T |
21622570 |
g |
21622570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 21644184 - 21644284
Alignment:
| Q |
30 |
taaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatgaatcttggacattattccaaaa |
129 |
Q |
| |
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|||||||||||||| |||| || || || |||||||||||||||||||| |||||| | | ||| || ||| |||||||||| ||||| || |||||||| |
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| T |
21644184 |
taaccactcgtaatcagcaagtatgcacttcaatggactgtcaaaagaatattcatctagagcttttatctaaagatgaatcctggactttgttccaaaa |
21644283 |
T |
|
| Q |
130 |
g |
130 |
Q |
| |
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| |
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|
| T |
21644284 |
g |
21644284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 21715545 - 21715445
Alignment:
| Q |
30 |
taaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatgaatcttggacattattccaaaa |
129 |
Q |
| |
|
|||||||||||||| |||| || || || | |||||||||||||||||| ||||| ||| |||||| ||| |||||||||| ||||| || |||||||| |
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| T |
21715545 |
taaccactcgtaatcagcaagtatgcactttaatggactgtcaaaagaatattcacctggcgctcttatctaaagatgaatcctggactttgttccaaaa |
21715446 |
T |
|
| Q |
130 |
g |
130 |
Q |
| |
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| |
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| T |
21715445 |
g |
21715445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 21703971 - 21704071
Alignment:
| Q |
30 |
taaccactcgtaatgagcatgtctgtacatcaatggactgtcaaaagaagattcatttggggctcttgtctgaagatgaatcttggacattattccaaaa |
129 |
Q |
| |
|
|||||||||||||| ||| || || || |||||| |||||||||| | ||| || |||||||||| |||||| | ||||||||||| || |||||||| |
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| T |
21703971 |
taaccactcgtaatcggcaagtatgcacttcaatgaactgtcaaaaaattattaatctggggctcttatctgaaaacgaatcttggactttgttccaaaa |
21704070 |
T |
|
| Q |
130 |
g |
130 |
Q |
| |
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| |
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| T |
21704071 |
g |
21704071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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