View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_high_1 (Length: 834)
Name: NF16149_high_1
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 746; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 4 - 817
Target Start/End: Original strand, 45881705 - 45882513
Alignment:
| Q |
4 |
agataataatggagtcctaagtgcaggacattgtgaaatagcataattcacaacctttttgagtaggcgaggctcaattcaaccacacttgcaacaatct |
103 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45881705 |
agatgataatggagtcctaagtgcaggacattgtgaaatagcataattcacaacctttttgagtaggcgaggctcaattcaaccacacttgcaacaatct |
45881804 |
T |
|
| Q |
104 |
agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaagtcataagaatagaatgtaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45881805 |
agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaagtcataagaatagaatgtaa |
45881904 |
T |
|
| Q |
204 |
gatttggaagttgtttctagatatccttgcatcttggggacaaaatgcaagttccaacaacagcatctttgaccttaaaaaatgacagtatgtgaaggat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
45881905 |
gatttggaagttgtttctagatatccttgcatcttggggacaaaatgcaagttccaacaacggcatctttgaccttaaaaaatgaaagtatgtgaaggat |
45882004 |
T |
|
| Q |
304 |
aatatagtcatgtaagtcacttgagtctatctacgttttcactcgcgctgagcattaatctcttcatcggtggtgggatgatgccctcatcagatcaatt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45882005 |
aatatagtcatgtaagtcacttgagtctatctacgttttcactcgcgctgagcattaatctcttcatcggtggtgggatgatggcctcatcagatcaatt |
45882104 |
T |
|
| Q |
404 |
agacattcaggttataatacctaataatcataaaagcttaaaacaacacggaataattttcttcaatacaagtaattatgcaattctatatcgagcttct |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
45882105 |
agacattcaggttataatacctaataatcataaaagcttaaaacaacacggaatgattttcttcaatacaagtaattatgcaattctataccgagcttct |
45882204 |
T |
|
| Q |
504 |
gaaattgaaaaaatcttattcaaatagttgaaatgtagatacaatcgagtaaacatagaaagtagattgggaataaattgaaagggagttcaaacgagag |
603 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45882205 |
gaaattgaaaaaatcttattcaaataattgaaatgtagatacaatcgagtaaacatagaaagtagattgggaataaattgaaagggagttcaaacgagag |
45882304 |
T |
|
| Q |
604 |
aaacaaattttgtatttaccatacaacttttaataaaagaatatgttcatattattttccttaaaatgaaatgcaagacatccgcgtaacgcgtggatca |
703 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
45882305 |
aaacaaattttgtatttaccatacaacttttaataaaagaatatgttcatattattttccttaaaatgaaatgcaagacatccgcgtaacgcgtgggtca |
45882404 |
T |
|
| Q |
704 |
aaatctagtttaacatttatacagagatattctcggaaatattgaccttgatggtatgtgctgcgcagtatctagtctaaaacagtgcaatttcttccag |
803 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45882405 |
aaatctag-----gaaatatacagagatattctcggaaatattgaccttgatggtaagtgctgcgcagtatctagtctaaaacagtgcaatttcttccag |
45882499 |
T |
|
| Q |
804 |
cctgatgtttgtag |
817 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45882500 |
cctgatgtttgtag |
45882513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 35 - 509
Target Start/End: Original strand, 45856708 - 45857178
Alignment:
| Q |
35 |
tgtgaaatagcataattcacaacctttttgagtaggcgaggctcaattcaaccacacttgcaacaatctagagtgtggagtgtgatagaggaatcactga |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||| || | ||||||| |||||||| |||||||||||||| | |
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|
| T |
45856708 |
tgtgaaatagcataattcacaacctttttgagttggcgaggctcaatgcaaccactcttggaatattctagagcgtggagtgcgatagaggaatcacgaa |
45856807 |
T |
|
| Q |
135 |
gagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaagtcataagaatagaatgtaagatttggaagttgtttctagatatccttgca |
234 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||| ||| | |||||||||||||||||||||||| ||| ||||||| | |
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|
| T |
45856808 |
gagataaaaccttagacacaaagttggtgaatatcttgaaagttcgaaagtcataggaacacaatgtaagatttggaagttgtttccagagatccttgta |
45856907 |
T |
|
| Q |
235 |
tcttggggacaaaatgcaagttccaacaacagcatctttgaccttaaaaaatgacagtatgtgaaggataatatagtcatgtaagtcacttgagtctatc |
334 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||| | || | ||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
45856908 |
tcttggggacaaaatgcaagttc---caaccgcgtctttagcgttcagaaaagacagtatgtggaggataatatagtcatgtaagtcac-tgagtctatc |
45857003 |
T |
|
| Q |
335 |
tacgttttcactcgcgctgagcattaatctcttcatcggtggtgggatgatgccctcatcagatcaattagacattcaggttataatacctaataatcat |
434 |
Q |
| |
|
| |||||||||| || ||||| ||||||||||| || |||||| | ||| ||| |||| | |||||||||||||| ||||||||| |||||||||| |
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|
| T |
45857004 |
ttcgttttcactatcgttgagctttaatctcttcgacgacggtgggttcatgatctcctcagctgaattagacattcagattataatacataataatcat |
45857103 |
T |
|
| Q |
435 |
aaaagcttaaaacaacacggaataattttcttcaatacaagtaattatgcaattctatatcgagcttctgaaatt |
509 |
Q |
| |
|
|| || ||||||||| || |||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
45857104 |
aagaggttaaaacaatacagaataattttctacaatacaagtaattatgcaattctataaggagcttttgaaatt |
45857178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 298 - 499
Target Start/End: Original strand, 45850873 - 45851070
Alignment:
| Q |
298 |
aaggataatatagtcatgtaagtcacttgagtctatctacgttttcactcgcgctgagcattaatctcttcatcggtggtgggatgatgccctcatcaga |
397 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||| ||||| | ||||| ||||||||||| | |||||||| | ||| |||||||| |
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|
| T |
45850873 |
aaggataatatagtcatgtaagtcact-gagtctatcttcgttctcacttgt--tgagctttaatctcttcgactgtggtgggttcatgatctcatcagt |
45850969 |
T |
|
| Q |
398 |
tcaattagacattcaggttataatacctaataatcataaaagcttaaaacaacacggaataattttcttcaatacaagtaattatgcaattctatatcga |
497 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| ||||||||| || ||| ||||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
45850970 |
ggaattagacattcagattataatacctaataatcat-aaaggttaaaacaatacaaaatgattttctgcaatacaagtaattatgcaattctataacga |
45851068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 2996392 - 2996459
Alignment:
| Q |
119 |
atagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaagtc |
186 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||| ||||| | ||| ||||||| |
|
|
| T |
2996392 |
atagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagttcgaaagtc |
2996459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 20948880 - 20948801
Alignment:
| Q |
99 |
aatctagagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtt |
178 |
Q |
| |
|
|||| |||||||| | || |||||||| ||||| |||||||||| ||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
20948880 |
aatcaagagtgtgtattgcgatagagggatcacgaagagataaaatcttagacacaaacttggtgaatatcttgtatgtt |
20948801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 20949555 - 20949498
Alignment:
| Q |
115 |
tgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttg |
172 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||| |||||||||||||||||| |
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|
| T |
20949555 |
tgtgatagaggaatcacaaagagataaaattttagacacgaatttggtgaatatcttg |
20949498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 20981806 - 20981867
Alignment:
| Q |
113 |
agtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaa |
174 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||| ||||| ||| |||||||||||||||| |
|
|
| T |
20981806 |
agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaa |
20981867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 20994965 - 20995026
Alignment:
| Q |
113 |
agtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaa |
174 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||| ||||| ||| |||||||||||||||| |
|
|
| T |
20994965 |
agtgagatagaggaatcacgaagagataaaatcttagacacgaatgtggtgaatatcttgaa |
20995026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 45870386 - 45870467
Alignment:
| Q |
113 |
agtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaagtcataagaat |
194 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||| | || |||||| ||||||||||||| | ||| ||||||||| ||||| |
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|
| T |
45870386 |
agtgagatagaggaatcccggagagataaaaccctagaaacaaatctggtgaatatcttataagttcgaaagtcatcagaat |
45870467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 20977539 - 20977482
Alignment:
| Q |
115 |
tgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttg |
172 |
Q |
| |
|
|||||| |||||||| | |||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
20977539 |
tgtgatggaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttg |
20977482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 44501338 - 44501417
Alignment:
| Q |
104 |
agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttgaatgtttgaaa |
183 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||||| ||||| ||||| ||||||||||||| || ||||| |
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|
| T |
44501338 |
agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgaaagtgtgaaa |
44501417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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