View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_high_11 (Length: 430)
Name: NF16149_high_11
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 54638446 - 54638026
Alignment:
| Q |
1 |
ccacatcatttccgaattcagaaggaaagaatctctataaacaatgaagatattcatatcatatagtaaataatgaagatatttttgagtttttgaatgt |
100 |
Q |
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| T |
54638446 |
ccacatcatttccgaattcagaaggaaagaatctctataaacaatgaagatattcatatcatatagtaaataatgaagatatttttgagtttttgaatgt |
54638347 |
T |
|
| Q |
101 |
accttaacatttcctgcttctttgatggcagagatgattttatcttgatcactcaagtgcgagcgagccacagtacaaattacaacatcaacctgtttta |
200 |
Q |
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| T |
54638346 |
accttaacatttcctgcttctttgatggcagagatgattttatcttgatcactcaagtgcgagcgagccacagtagaaattacaacatcaacctgtttta |
54638247 |
T |
|
| Q |
201 |
ttgctttcaccaaactttgatgatcatatagatccccctgcatataacacactgaatatcatatccggacactcaaaatttgacatggatactaaaatat |
300 |
Q |
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| T |
54638246 |
ttgctttcaccaaactttgatgatcatatagatccccctgcatataacacactgaatatcatatccggacactcaaaatttgacatggatactaaaatat |
54638147 |
T |
|
| Q |
301 |
ctctaaattattacactaagataatttgaccaatataaaaagttaagcgtgaccagaaaagaataggatttgacgcacaagaacaaaattgacggacaag |
400 |
Q |
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| T |
54638146 |
ctctaaattattacactaagataatttgaccaatataaaaagttaagcgtgaccagaaaagaataggatttgacgcacaagaacaaaattgacggacaag |
54638047 |
T |
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| Q |
401 |
tccttgaatttgttgatgatg |
421 |
Q |
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| T |
54638046 |
tccttgaatttgttgatgatg |
54638026 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 26513862 - 26513812
Alignment:
| Q |
100 |
taccttaacatttcctgcttctttgatggcagagatgattttatcttgatc |
150 |
Q |
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| T |
26513862 |
taccttaacatttccagcttctttgatggctgaaatgatcttatattgatc |
26513812 |
T |
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