View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16149_high_13 (Length: 415)

Name: NF16149_high_13
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16149_high_13
NF16149_high_13
[»] chr2 (4 HSPs)
chr2 (185-394)||(43277882-43278091)
chr2 (13-194)||(43278105-43278284)
chr2 (185-351)||(43282394-43282560)
chr2 (13-116)||(43283070-43283173)
[»] chr8 (3 HSPs)
chr8 (13-115)||(35146439-35146541)
chr8 (112-175)||(35146976-35147039)
chr8 (230-327)||(35147199-35147295)
[»] chr6 (11 HSPs)
chr6 (13-111)||(15374189-15374287)
chr6 (13-115)||(19962063-19962165)
chr6 (13-111)||(15353990-15354088)
chr6 (29-107)||(15373124-15373202)
chr6 (43-111)||(15322534-15322602)
chr6 (29-109)||(15352693-15352773)
chr6 (13-68)||(14864615-14864670)
chr6 (13-92)||(15323849-15323928)
chr6 (29-96)||(19961301-19961368)
chr6 (112-152)||(14864477-14864517)
chr6 (112-152)||(15374450-15374490)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 185 - 394
Target Start/End: Complemental strand, 43278091 - 43277882
Alignment:
Q  185 ttgaaacttgttaacaagttgtgttgcaaggtggctgaaactatttcatgtaaaaatatgtttaacatttttagactgaagcatgcattgcaagttagct 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43278091 ttgaaacttgttaacaagttgtgttgcaaggtggctgaaactatttcatgtaaaaatatgtttaacatttttagactgaagcatgcattgcaagttagct 43277992  T
Q  285 gtttgacagtgttctagatattcttgcttttaattgttttcacaacagttttgaatatatacaagttcgtatttcttcaagtttcgaatggttttcacag 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  43277991 gtttgacagtgttctagatattcttgcttttaattgttttcacaacagttttgaatatatacaagttcgtatttattcaagtttcaaatggttttcacag 43277892  T
Q  385 atattgtgaa 394  Q
    ||||||||||    
T  43277891 atattgtgaa 43277882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 43278284 - 43278105
Alignment:
Q  13 atgaactttgtatctggtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgacagaaatgcagacaagaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43278284 atgaactttgtatctggtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgacagaaatgcagacaagaa 43278185  T
Q  113 ctgaaagaccaggctgttcagaaaatgaagaggcaatatcttactatcaagcaaatccaaataatgacatagttgaaacttg 194  Q
    |||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||    
T  43278184 ctgaaagaccaggctgttcagaaaatgaagaggca--atcttaccatcaagcaaatccaaataatgacatagttgaaacttg 43278105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 185 - 351
Target Start/End: Complemental strand, 43282560 - 43282394
Alignment:
Q  185 ttgaaacttgttaacaagttgtgttgcaaggtggctgaaactatttcatgtaaaaatatgtttaacatttttagactgaagcatgcattgcaagttagct 284  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  43282560 ttgaaacttgttaacaagttgtgttgcaaggaggctgaaactatttcatgcaaaaatatgtttaacctttttagactgaagcatgcattgccagttagct 43282461  T
Q  285 gtttgacagtgttctagatattcttgcttttaattgttttcacaacagttttgaatatatacaagtt 351  Q
    |||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||    
T  43282460 gtttgacagtcttctagatattcaagctcttaattgttttcacaacagttttgaatatgtacaagtt 43282394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 43283173 - 43283070
Alignment:
Q  13 atgaactttgtatctggtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgacagaaatgcagacaagaa 112  Q
    |||||||| ||||| ||||||||||| ||||||| |||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43283173 atgaacttggtatcaggtagcacacacgtttcaactgaaaacgaggaaagcctgcagaaaaatttgtctgaaggagaactgacagaaatgcagacaagaa 43283074  T
Q  113 ctga 116  Q
    ||||    
T  43283073 ctga 43283070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 35146439 - 35146541
Alignment:
Q  13 atgaactttgtatctggtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgacagaaatgcagacaagaa 112  Q
    ||||||||  |||| |||||||| || | |||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||    
T  35146439 atgaacttgatatcaggtagcacgcagggttcaaacgaagatgaggaaagcctgcagaaaaatctgtctgaaggagaactgacaggaatgcagacaagaa 35146538  T
Q  113 ctg 115  Q
    |||    
T  35146539 ctg 35146541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 35146976 - 35147039
Alignment:
Q  112 actgaaagaccaggctgttcagaaaatgaagaggcaatatcttactatcaagcaaatccaaata 175  Q
    ||||||||||||||||||||||| |||||||||||||||||  |||||| ||||| ||||||||    
T  35146976 actgaaagaccaggctgttcagacaatgaagaggcaatatccaactatcgagcaattccaaata 35147039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 35147199 - 35147295
Alignment:
Q  230 tcatgtaaaaatatgtttaacatttttagactgaagcatgcattgcaagttagctgtttgacagtgttctagatattcttgcttttaattgttttcac 327  Q
    |||||||||||||||||| || ||||||||||||| |||||||||| | |||| ||| ||  |||||| ||||  |||  ||||||||| ||||||||    
T  35147199 tcatgtaaaaatatgtttgac-tttttagactgaaacatgcattgcgaattagttgtctggtagtgttgtagacgttcaagcttttaatggttttcac 35147295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 15374189 - 15374287
Alignment:
Q  13 atgaactttgtatctggtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgacagaaatgcagacaaga 111  Q
    ||||||||  |||| ||||||||||| | |||||| ||||||| |||||||||||||||| || | ||||||||||||||||||| |||||||||||||    
T  15374189 atgaacttgatatcaggtagcacacagggttcaaacgaagatgcggaaagcctgcagaaaaatctttctgaaggagaactgacaggaatgcagacaaga 15374287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 19962165 - 19962063
Alignment:
Q  13 atgaactttgtatctggtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgacagaaatgcagacaagaa 112  Q
    |||||||| ||||| ||||||||||| | |||||| |||||||||||||||||||| ||| || ||||| |||||||| ||| |  ||||||||||||||    
T  19962165 atgaacttggtatcaggtagcacacagggttcaaacgaagatgaggaaagcctgcaaaaaaatatgtctaaaggagaaatgaaaagaatgcagacaagaa 19962066  T
Q  113 ctg 115  Q
    |||    
T  19962065 ctg 19962063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 15353990 - 15354088
Alignment:
Q  13 atgaactttgtatctggtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgacagaaatgcagacaaga 111  Q
    ||||||||  |||| ||||||||||||| ||||||  |||||| |||||||||||||||| || | ||| ||||||||||||||  |||||||||||||    
T  15353990 atgaacttgatatcaggtagcacacatggttcaaacaaagatgcggaaagcctgcagaaaaatctttctaaaggagaactgacaagaatgcagacaaga 15354088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 15373202 - 15373124
Alignment:
Q  29 gtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgacagaaatgcagac 107  Q
    |||||||||| | |||||| ||||||| |||||||||| ||||| || | ||||||||||||||||||| |||||||||    
T  15373202 gtagcacacaaggttcaaacgaagatgtggaaagcctggagaaaaatctttctgaaggagaactgacagtaatgcagac 15373124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 15322602 - 15322534
Alignment:
Q  43 tcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgacagaaatgcagacaaga 111  Q
    ||||| ||||||| |||||||||||||||| || | | ||||||||||||||||| |||||||||||||    
T  15322602 tcaaacgaagatgtggaaagcctgcagaaaaatctttatgaaggagaactgacaggaatgcagacaaga 15322534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 15352773 - 15352693
Alignment:
Q  29 gtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgacagaaatgcagacaa 109  Q
    |||| ||||| | |||||| ||||||| |||||||||||||||| || | | |||||||||||||| || |||||||||||    
T  15352773 gtagtacacagggttcaaacgaagatgtggaaagcctgcagaaaaatctttatgaaggagaactgataggaatgcagacaa 15352693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 14864670 - 14864615
Alignment:
Q  13 atgaactttgtatctggtagcacacatgtttcaaatgaagatgaggaaagcctgca 68  Q
    ||||||||| |||| ||||||||||| | |||||||||||||||||||||| ||||    
T  14864670 atgaactttatatcaggtagcacacagggttcaaatgaagatgaggaaagcttgca 14864615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 15323849 - 15323928
Alignment:
Q  13 atgaactttgtatctggtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaact 92  Q
    ||||||||  |||| ||||| ||||| | |||||| ||||||| |||||||||||||||| || | ||||||||||||||    
T  15323849 atgaacttgatatcaggtagtacacagggttcaaacgaagatgcggaaagcctgcagaaaaatctttctgaaggagaact 15323928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 19961301 - 19961368
Alignment:
Q  29 gtagcacacatgtttcaaatgaagatgaggaaagcctgcagaaacatttgtctgaaggagaactgaca 96  Q
    |||| ||||| | |||||| |||||||||||||| ||||||||| || ||||||||||||||| ||||    
T  19961301 gtaggacacagggttcaaacgaagatgaggaaaggctgcagaaaaatatgtctgaaggagaacagaca 19961368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 14864517 - 14864477
Alignment:
Q  112 actgaaagaccaggctgttcagaaaatgaagaggcaatatc 152  Q
    |||||||||||| |||||||||| |||||||||||||||||    
T  14864517 actgaaagaccatgctgttcagacaatgaagaggcaatatc 14864477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 15374450 - 15374490
Alignment:
Q  112 actgaaagaccaggctgttcagaaaatgaagaggcaatatc 152  Q
    |||||||||||| ||| |||||| |||||||||||||||||    
T  15374450 actgaaagaccatgctattcagacaatgaagaggcaatatc 15374490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University