View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_high_14 (Length: 389)
Name: NF16149_high_14
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 38399599 - 38399232
Alignment:
| Q |
20 |
atctgatttgcttcaatgaagaatctagctgcctttcaagtgtttcaagatctttgctgcttagagggccaagatcttctcccataaggttcctaatgta |
119 |
Q |
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| T |
38399599 |
atctgatttgcttcaatgaagaatctagctgcctttcaagtgtttcaagatctttgctgcttagagggccaagatcttctcccataaggttcctaatgta |
38399500 |
T |
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| Q |
120 |
cgagtcaaatacttcattggctcattattttctacaatcatgtacttattttagaagtatatatgatcaagtatcggtacctctgagtgcgttgtagaga |
219 |
Q |
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| T |
38399499 |
caagtcaaatacttcattggctcattattttctacaatcatgtacttattttagaagtatatatgatcaagtatcggtacctctgagtgcgttgtagaga |
38399400 |
T |
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| Q |
220 |
ttcataacgtgccttcagcttcaagtattcctgttggctgcttaattcctgcatttttggcaggaaaaacgttgcatcttaggatcttattgtatcaaaa |
319 |
Q |
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| T |
38399399 |
ttcataacgtgccttcagcttcaagtattcctgttggctgcttaattcctgcatttttggcaggaaaaacgttgcatcttaagatcttattttatcaaaa |
38399300 |
T |
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| Q |
320 |
acatatcatcaatgcatattcatcataaatgtccaaagtcttattagtgaatctattcctaattattt |
387 |
Q |
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| T |
38399299 |
acatatcatcaatgcatattcatcataaatgtccaaaatcttattagtgaatctattcataattattt |
38399232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 34827378 - 34827473
Alignment:
| Q |
20 |
atctgatttgcttcaatgaagaatctagctgcctttcaagtgtttcaagatctttgctgcttagagggccaagatcttctcccataaggttcctaa |
115 |
Q |
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| T |
34827378 |
atcttatttgcttcaaggatgaatctagctgcctttcaagcgactcgagctctttgctgctcagagggccaagatcttctcccataaggttcctaa |
34827473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 34827580 - 34827629
Alignment:
| Q |
220 |
ttcataacgtgccttcagcttcaagtattcctgttggctgcttaattcct |
269 |
Q |
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| T |
34827580 |
ttcataacgtgccttcagcttcaaatattcttgttgactgcttaactcct |
34827629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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