View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16149_high_19 (Length: 349)
Name: NF16149_high_19
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 41011162 - 41011485
Alignment:
| Q |
18 |
acaccacccctaattaattaagtgcttctataaatcataatcatcatgtatgcacactctaattccaacaatattccattctcaacaccctttcttcttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41011162 |
acaccacccctaattaattaagtgcttctataaatcataatcatcatgtatgcacactctaattccaacaatattccattctcaacaccctttcttcttc |
41011261 |
T |
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| Q |
118 |
actcttcttctccatttatggaacaaaacaactccatccctgatttcactgagttagactcattccaagacactctctcccaactgaataactctgagtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41011262 |
actcttcttctccatttatggaacaaaacaactccatccctgatttcactgagttagactcattccaagacactctctcccaactgaataactctgagtt |
41011361 |
T |
|
| Q |
218 |
gagcagtggctatagcagctatggtggatcaccttcaccaagtactccaatcttgatgcaaaggagcattagcagtcattcccttcagtacaataatggg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41011362 |
gagcagtggctatagcagctatggtggatcaccttcaccaagtactccaatcttgatgcaaaggagcattagcagtcattcccttcagtacaataatggg |
41011461 |
T |
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| Q |
318 |
actcaccattatcccctctctgct |
341 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
41011462 |
actcaccattatcccctctctgct |
41011485 |
T |
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