View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16149_high_2 (Length: 821)
Name: NF16149_high_2
Description: NF16149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16149_high_2 |
 | |
|
| [»] scaffold0060 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0060 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 405 - 805
Target Start/End: Complemental strand, 63924 - 63526
Alignment:
| Q |
405 |
tttgatcgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggttttgtggtgagttatgattcttttaagggtttggtt |
504 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
63924 |
tttgattgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggtttagtggtgagttatgattcttttaagggtttggtt |
63825 |
T |
|
| Q |
505 |
ttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtgtggttaggatggtgggatttgttgttaagatggggatgtggagac |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||| | |
|
|
| T |
63824 |
ttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtatggttgggatggtgggatttgttgtta----ggggatgtggagtc |
63729 |
T |
|
| Q |
605 |
aaattgttaagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggattgtcatgatgattgaaaaatatgatattggtgg---nn |
701 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
63728 |
aaattgttaagtttg-tgttgtttctagtgatgtttgtgtttctcttgatacgattttggatggtcatgatgattgaaaaatatgatgttggtggttttt |
63630 |
T |
|
| Q |
702 |
nnnnnnncaatgtacattattatatagccaataacatgttttgattaatttgattggaaggaaaaagaataattattcggctatatcgtaagtgtgatct |
801 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
63629 |
tttttttcaatgtacattattatatagccaataacatgttttgattaatttgattggaaggaaaaagaataattattcggctatatcgtaagtgtgatct |
63530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 204 - 330
Target Start/End: Complemental strand, 64567 - 64454
Alignment:
| Q |
204 |
aagactataacccaactcaaccctttctgtctctccctcatcaccaaattcacccaatcccacaacttcacctacattgacacctttcttaaaaccctcc |
303 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
64567 |
aagactataacccaactcaaccctt-ctgtctctccctcttcaccaaattcacccaatcccacaacttc------------acctttcttaaaaccctct |
64481 |
T |
|
| Q |
304 |
ctaaaccctactctttcacccaagatt |
330 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
64480 |
ctaaaccctactctttcacccaagatt |
64454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 333 - 667
Target Start/End: Original strand, 30300928 - 30301259
Alignment:
| Q |
333 |
ggttttggaagatgtgatgatgaggaatgggtgttatcctcacgagagttcttatcaacatattttgtatgatttgatcgatttgaagagattttaggag |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| | ||||||| |||||| ||||||||||||||| ||||| |
|
|
| T |
30300928 |
ggttttggaagatgtgatgatgaggaatgggtgttatcctaatgagagttcttatcagcatgtgttgtatggtttgattgatttgaagagatttgaggag |
30301027 |
T |
|
| Q |
433 |
gctaaaggggttgttgagaagatggttttgaaaggttttgtggtgagttatgattcttttaagggtttggttttggggttttgtagagagggtttggttg |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| |
|
|
| T |
30301028 |
gctaaaggggttgttgagaagatggttttgaagggttttgtggtgagttatgattcttttaagggtttggttttggggttttgtagagaagggttgattg |
30301127 |
T |
|
| Q |
533 |
aggatgttgattggggtgttaggagtgtggttaggatggtgggatttgttgttaagatggggatgtggagacaaattgttaagtttgttgttgtttctag |
632 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| |||| |||||| || ||||||||||||||||| |||||||| | | ||||||||||||| |
|
|
| T |
30301128 |
aggaagttgattggggtgttaggagtatggttagga---tgggttttgttcctaggatggggatgtggagaccaattgttagatgtattgttgtttctag |
30301224 |
T |
|
| Q |
633 |
tgatgtttgtgtttctcttgatacgattttggatt |
667 |
Q |
| |
|
|||||| |||||||| |||||| ||||||||||| |
|
|
| T |
30301225 |
agatgttagtgtttcttttgataagattttggatt |
30301259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 74 - 328
Target Start/End: Original strand, 30300182 - 30300444
Alignment:
| Q |
74 |
aacaacaacaaagacaacctcatcctccaacgcttccaccacaaagtctggctaacctcaaaagaagcaacaacc------------ctaacaaatccat |
161 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
30300182 |
aacaacaacaaagataacctcattctccaacgtttccaccacaaagactggttaacctcaaaagaagcaacaaccttaacaaactctctaacaaacccat |
30300281 |
T |
|
| Q |
162 |
ctctctcctttataaccatcttccatctctactcttcccgcaaagactataacccaactcaaccctttctgtctctccctcatcaccaaattcacccaat |
261 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
30300282 |
ctctctcctt---aacaatcttccatctctactcttctcgcaaagactacaacccaactcaacc-tttctgtatctccctcatcaccaaattcactcaat |
30300377 |
T |
|
| Q |
262 |
cccacaacttcacctacattgacacctttcttaaaaccctccctaaaccctactctttcacccaaga |
328 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30300378 |
cccacaatttcacctacattgacacccttcttaaaaccctccctaaaccctactctttcactcaaga |
30300444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 613 - 699
Target Start/End: Original strand, 30302187 - 30302273
Alignment:
| Q |
613 |
aagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggattgtcatgatgattgaaaaatatgatattggtgg |
699 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
30302187 |
aagtgtgttgttgctgttagtgatgtttgtgtttctcttgatacgattttggatagtcatgatgattgaaaaatatgatgttggtgg |
30302273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 204 - 305
Target Start/End: Original strand, 8445043 - 8445143
Alignment:
| Q |
204 |
aagactataacccaactcaaccctttctgtctctccctcatcaccaaattcacccaatcccacaacttcacctacattgacacctttcttaaaaccctcc |
303 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8445043 |
aagactataacccaacccaaccctt-ctgtctctccctcgtcaccaaattcacccaatcccacaacttcacctacattgacacctttcttaaaaccctcc |
8445141 |
T |
|
| Q |
304 |
ct |
305 |
Q |
| |
|
|| |
|
|
| T |
8445142 |
ct |
8445143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University